Motif 468 (n=98)

Position-wise Probabilities

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uniprot genes site source protein function
A0A0C4DFX4 None S2706 ochoa Snf2 related CREBBP activator protein None
A8CG34 POM121C S271 ochoa Nuclear envelope pore membrane protein POM 121C (Nuclear pore membrane protein 121-2) (POM121-2) (Pore membrane protein of 121 kDa C) Essential component of the nuclear pore complex (NPC). The repeat-containing domain may be involved in anchoring components of the pore complex to the pore membrane. When overexpressed in cells induces the formation of cytoplasmic annulate lamellae (AL). {ECO:0000269|PubMed:17900573}.
O15061 SYNM S1153 ochoa Synemin (Desmuslin) Type-VI intermediate filament (IF) which plays an important cytoskeletal role within the muscle cell cytoskeleton. It forms heteromeric IFs with desmin and/or vimentin, and via its interaction with cytoskeletal proteins alpha-dystrobrevin, dystrophin, talin-1, utrophin and vinculin, is able to link these heteromeric IFs to adherens-type junctions, such as to the costameres, neuromuscular junctions, and myotendinous junctions within striated muscle cells. {ECO:0000269|PubMed:11353857, ECO:0000269|PubMed:16777071, ECO:0000269|PubMed:18028034}.
O15234 CASC3 S381 ochoa Protein CASC3 (Cancer susceptibility candidate gene 3 protein) (Metastatic lymph node gene 51 protein) (MLN 51) (Protein barentsz) (Btz) Required for pre-mRNA splicing as component of the spliceosome (PubMed:28502770, PubMed:29301961). Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throughout all stages of mRNA metabolism thereby influencing downstream processes including nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). Stimulates the ATPase and RNA-helicase activities of EIF4A3. Plays a role in the stress response by participating in cytoplasmic stress granules assembly and by favoring cell recovery following stress. Component of the dendritic ribonucleoprotein particles (RNPs) in hippocampal neurons. May play a role in mRNA transport. Binds spliced mRNA in sequence-independent manner, 20-24 nucleotides upstream of mRNA exon-exon junctions. Binds poly(G) and poly(U) RNA homomer. {ECO:0000269|PubMed:17375189, ECO:0000269|PubMed:17652158, ECO:0000269|PubMed:28502770, ECO:0000269|PubMed:29301961}.
O15516 CLOCK S449 ochoa Circadian locomoter output cycles protein kaput (hCLOCK) (EC 2.3.1.48) (Class E basic helix-loop-helix protein 8) (bHLHe8) Transcriptional activator which forms a core component of the circadian clock. The circadian clock, an internal time-keeping system, regulates various physiological processes through the generation of approximately 24 hour circadian rhythms in gene expression, which are translated into rhythms in metabolism and behavior. It is derived from the Latin roots 'circa' (about) and 'diem' (day) and acts as an important regulator of a wide array of physiological functions including metabolism, sleep, body temperature, blood pressure, endocrine, immune, cardiovascular, and renal function. Consists of two major components: the central clock, residing in the suprachiasmatic nucleus (SCN) of the brain, and the peripheral clocks that are present in nearly every tissue and organ system. Both the central and peripheral clocks can be reset by environmental cues, also known as Zeitgebers (German for 'timegivers'). The predominant Zeitgeber for the central clock is light, which is sensed by retina and signals directly to the SCN. The central clock entrains the peripheral clocks through neuronal and hormonal signals, body temperature and feeding-related cues, aligning all clocks with the external light/dark cycle. Circadian rhythms allow an organism to achieve temporal homeostasis with its environment at the molecular level by regulating gene expression to create a peak of protein expression once every 24 hours to control when a particular physiological process is most active with respect to the solar day. Transcription and translation of core clock components (CLOCK, NPAS2, BMAL1, BMAL2, PER1, PER2, PER3, CRY1 and CRY2) plays a critical role in rhythm generation, whereas delays imposed by post-translational modifications (PTMs) are important for determining the period (tau) of the rhythms (tau refers to the period of a rhythm and is the length, in time, of one complete cycle). A diurnal rhythm is synchronized with the day/night cycle, while the ultradian and infradian rhythms have a period shorter and longer than 24 hours, respectively. Disruptions in the circadian rhythms contribute to the pathology of cardiovascular diseases, cancer, metabolic syndromes and aging. A transcription/translation feedback loop (TTFL) forms the core of the molecular circadian clock mechanism. Transcription factors, CLOCK or NPAS2 and BMAL1 or BMAL2, form the positive limb of the feedback loop, act in the form of a heterodimer and activate the transcription of core clock genes and clock-controlled genes (involved in key metabolic processes), harboring E-box elements (5'-CACGTG-3') within their promoters. The core clock genes: PER1/2/3 and CRY1/2 which are transcriptional repressors form the negative limb of the feedback loop and interact with the CLOCK|NPAS2-BMAL1|BMAL2 heterodimer inhibiting its activity and thereby negatively regulating their own expression. This heterodimer also activates nuclear receptors NR1D1/2 and RORA/B/G, which form a second feedback loop and which activate and repress BMAL1 transcription, respectively. Regulates the circadian expression of ICAM1, VCAM1, CCL2, THPO and MPL and also acts as an enhancer of the transactivation potential of NF-kappaB. Plays an important role in the homeostatic regulation of sleep. The CLOCK-BMAL1 heterodimer regulates the circadian expression of SERPINE1/PAI1, VWF, B3, CCRN4L/NOC, NAMPT, DBP, MYOD1, PPARGC1A, PPARGC1B, SIRT1, GYS2, F7, NGFR, GNRHR, BHLHE40/DEC1, ATF4, MTA1, KLF10 and also genes implicated in glucose and lipid metabolism. Promotes rhythmic chromatin opening, regulating the DNA accessibility of other transcription factors. The CLOCK-BMAL2 heterodimer activates the transcription of SERPINE1/PAI1 and BHLHE40/DEC1. The preferred binding motif for the CLOCK-BMAL1 heterodimer is 5'-CACGTGA-3', which contains a flanking adenine nucleotide at the 3-prime end of the canonical 6-nucleotide E-box sequence (PubMed:23229515). CLOCK specifically binds to the half-site 5'-CAC-3', while BMAL1 binds to the half-site 5'-GTGA-3' (PubMed:23229515). The CLOCK-BMAL1 heterodimer also recognizes the non-canonical E-box motifs 5'-AACGTGA-3' and 5'-CATGTGA-3' (PubMed:23229515). CLOCK has an intrinsic acetyltransferase activity, which enables circadian chromatin remodeling by acetylating histones and nonhistone proteins, including its own partner BMAL1. Represses glucocorticoid receptor NR3C1/GR-induced transcriptional activity by reducing the association of NR3C1/GR to glucocorticoid response elements (GREs) via the acetylation of multiple lysine residues located in its hinge region (PubMed:21980503). The acetyltransferase activity of CLOCK is as important as its transcription activity in circadian control. Acetylates metabolic enzymes IMPDH2 and NDUFA9 in a circadian manner. Facilitated by BMAL1, rhythmically interacts and acetylates argininosuccinate synthase 1 (ASS1) leading to enzymatic inhibition of ASS1 as well as the circadian oscillation of arginine biosynthesis and subsequent ureagenesis (PubMed:28985504). Drives the circadian rhythm of blood pressure through transcriptional activation of ATP1B1 (By similarity). {ECO:0000250|UniProtKB:O08785, ECO:0000269|PubMed:14645221, ECO:0000269|PubMed:18587630, ECO:0000269|PubMed:21659603, ECO:0000269|PubMed:21980503, ECO:0000269|PubMed:22284746, ECO:0000269|PubMed:23229515, ECO:0000269|PubMed:23785138, ECO:0000269|PubMed:24005054, ECO:0000269|PubMed:28985504}.
O43182 ARHGAP6 S344 ochoa Rho GTPase-activating protein 6 (Rho-type GTPase-activating protein 6) (Rho-type GTPase-activating protein RhoGAPX-1) GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state. Could regulate the interactions of signaling molecules with the actin cytoskeleton. Promotes continuous elongation of cytoplasmic processes during cell motility and simultaneous retraction of the cell body changing the cell morphology. {ECO:0000269|PubMed:10699171}.
O43683 BUB1 S314 ochoa|psp Mitotic checkpoint serine/threonine-protein kinase BUB1 (hBUB1) (EC 2.7.11.1) (BUB1A) Serine/threonine-protein kinase that performs 2 crucial functions during mitosis: it is essential for spindle-assembly checkpoint signaling and for correct chromosome alignment. Has a key role in the assembly of checkpoint proteins at the kinetochore, being required for the subsequent localization of CENPF, BUB1B, CENPE and MAD2L1. Required for the kinetochore localization of PLK1. Required for centromeric enrichment of AUKRB in prometaphase. Plays an important role in defining SGO1 localization and thereby affects sister chromatid cohesion. Promotes the centromeric localization of TOP2A (PubMed:35044816). Acts as a substrate for anaphase-promoting complex or cyclosome (APC/C) in complex with its activator CDH1 (APC/C-Cdh1). Necessary for ensuring proper chromosome segregation and binding to BUB3 is essential for this function. Can regulate chromosome segregation in a kinetochore-independent manner. Can phosphorylate BUB3. The BUB1-BUB3 complex plays a role in the inhibition of APC/C when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1. Kinase activity is essential for inhibition of APC/CCDC20 and for chromosome alignment but does not play a major role in the spindle-assembly checkpoint activity. Mediates cell death in response to chromosome missegregation and acts to suppress spontaneous tumorigenesis. {ECO:0000269|PubMed:10198256, ECO:0000269|PubMed:15020684, ECO:0000269|PubMed:15525512, ECO:0000269|PubMed:15723797, ECO:0000269|PubMed:16760428, ECO:0000269|PubMed:17158872, ECO:0000269|PubMed:19487456, ECO:0000269|PubMed:20739936, ECO:0000269|PubMed:35044816}.
O60271 SPAG9 S279 ochoa C-Jun-amino-terminal kinase-interacting protein 4 (JIP-4) (JNK-interacting protein 4) (Cancer/testis antigen 89) (CT89) (Human lung cancer oncogene 6 protein) (HLC-6) (JNK-associated leucine-zipper protein) (JLP) (Mitogen-activated protein kinase 8-interacting protein 4) (Proliferation-inducing protein 6) (Protein highly expressed in testis) (PHET) (Sperm surface protein) (Sperm-associated antigen 9) (Sperm-specific protein) (Sunday driver 1) The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module (PubMed:14743216). Regulates lysosomal positioning by acting as an adapter protein which links PIP4P1-positive lysosomes to the dynein-dynactin complex (PubMed:29146937). Assists PIKFYVE selective functionality in microtubule-based endosome-to-TGN trafficking (By similarity). {ECO:0000250|UniProtKB:Q58A65, ECO:0000269|PubMed:14743216, ECO:0000269|PubMed:29146937}.
O60566 BUB1B S288 ochoa Mitotic checkpoint serine/threonine-protein kinase BUB1 beta (EC 2.7.11.1) (MAD3/BUB1-related protein kinase) (hBUBR1) (Mitotic checkpoint kinase MAD3L) (Protein SSK1) Essential component of the mitotic checkpoint. Required for normal mitosis progression. The mitotic checkpoint delays anaphase until all chromosomes are properly attached to the mitotic spindle. One of its checkpoint functions is to inhibit the activity of the anaphase-promoting complex/cyclosome (APC/C) by blocking the binding of CDC20 to APC/C, independently of its kinase activity. The other is to monitor kinetochore activities that depend on the kinetochore motor CENPE. Required for kinetochore localization of CENPE. Negatively regulates PLK1 activity in interphase cells and suppresses centrosome amplification. Also implicated in triggering apoptosis in polyploid cells that exit aberrantly from mitotic arrest. May play a role for tumor suppression. {ECO:0000269|PubMed:10477750, ECO:0000269|PubMed:11702782, ECO:0000269|PubMed:14706340, ECO:0000269|PubMed:15020684, ECO:0000269|PubMed:19411850, ECO:0000269|PubMed:19503101}.
O60716 CTNND1 S331 ochoa Catenin delta-1 (Cadherin-associated Src substrate) (CAS) (p120 catenin) (p120(ctn)) (p120(cas)) Key regulator of cell-cell adhesion that associates with and regulates the cell adhesion properties of both C-, E- and N-cadherins, being critical for their surface stability (PubMed:14610055, PubMed:20371349). Promotes localization and retention of DSG3 at cell-cell junctions, via its interaction with DSG3 (PubMed:18343367). Beside cell-cell adhesion, regulates gene transcription through several transcription factors including ZBTB33/Kaiso2 and GLIS2, and the activity of Rho family GTPases and downstream cytoskeletal dynamics (PubMed:10207085, PubMed:20371349). Implicated both in cell transformation by SRC and in ligand-induced receptor signaling through the EGF, PDGF, CSF-1 and ERBB2 receptors (PubMed:17344476). {ECO:0000269|PubMed:10207085, ECO:0000269|PubMed:14610055, ECO:0000269|PubMed:17344476, ECO:0000269|PubMed:18343367, ECO:0000269|PubMed:20371349}.
O75995 SASH3 S158 ochoa SAM and SH3 domain-containing protein 3 (SH3 protein expressed in lymphocytes homolog) May function as a signaling adapter protein in lymphocytes. {ECO:0000250|UniProtKB:Q8K352}.
O95251 KAT7 S111 ochoa Histone acetyltransferase KAT7 (EC 2.3.1.48) (Histone acetyltransferase binding to ORC1) (Lysine acetyltransferase 7) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 2) (MYST-2) Catalytic subunit of histone acetyltransferase HBO1 complexes, which specifically mediate acetylation of histone H3 at 'Lys-14' (H3K14ac), thereby regulating various processes, such as gene transcription, protein ubiquitination, immune regulation, stem cell pluripotent and self-renewal maintenance and embryonic development (PubMed:16387653, PubMed:21753189, PubMed:24065767, PubMed:26620551, PubMed:31767635, PubMed:31827282). Some complexes also catalyze acetylation of histone H4 at 'Lys-5', 'Lys-8' and 'Lys-12' (H4K5ac, H4K8ac and H4K12ac, respectively), regulating DNA replication initiation, regulating DNA replication initiation (PubMed:10438470, PubMed:19187766, PubMed:20129055, PubMed:24065767). Specificity of the HBO1 complexes is determined by the scaffold subunit: complexes containing BRPF scaffold (BRPF1, BRD1/BRPF2 or BRPF3) direct KAT7/HBO1 specificity towards H3K14ac, while complexes containing JADE (JADE1, JADE2 and JADE3) scaffold direct KAT7/HBO1 specificity towards histone H4 (PubMed:19187766, PubMed:20129055, PubMed:24065767, PubMed:26620551). H3K14ac promotes transcriptional elongation by facilitating the processivity of RNA polymerase II (PubMed:31827282). Acts as a key regulator of hematopoiesis by forming a complex with BRD1/BRPF2, directing KAT7/HBO1 specificity towards H3K14ac and promoting erythroid differentiation (PubMed:21753189). H3K14ac is also required for T-cell development (By similarity). KAT7/HBO1-mediated acetylation facilitates two consecutive steps, licensing and activation, in DNA replication initiation: H3K14ac facilitates the activation of replication origins, and histone H4 acetylation (H4K5ac, H4K8ac and H4K12ac) facilitates chromatin loading of MCM complexes, promoting DNA replication licensing (PubMed:10438470, PubMed:11278932, PubMed:18832067, PubMed:19187766, PubMed:20129055, PubMed:21856198, PubMed:24065767, PubMed:26620551). Acts as a positive regulator of centromeric CENPA assembly: recruited to centromeres and mediates histone acetylation, thereby preventing centromere inactivation mediated by SUV39H1, possibly by increasing histone turnover/exchange (PubMed:27270040). Involved in nucleotide excision repair: phosphorylation by ATR in response to ultraviolet irradiation promotes its localization to DNA damage sites, where it mediates histone acetylation to facilitate recruitment of XPC at the damaged DNA sites (PubMed:28719581). Acts as an inhibitor of NF-kappa-B independently of its histone acetyltransferase activity (PubMed:16997280). {ECO:0000250|UniProtKB:Q5SVQ0, ECO:0000269|PubMed:10438470, ECO:0000269|PubMed:11278932, ECO:0000269|PubMed:16387653, ECO:0000269|PubMed:16997280, ECO:0000269|PubMed:18832067, ECO:0000269|PubMed:19187766, ECO:0000269|PubMed:20129055, ECO:0000269|PubMed:21753189, ECO:0000269|PubMed:21856198, ECO:0000269|PubMed:24065767, ECO:0000269|PubMed:26620551, ECO:0000269|PubMed:27270040, ECO:0000269|PubMed:28719581, ECO:0000269|PubMed:31767635, ECO:0000269|PubMed:31827282}.; FUNCTION: Plays a central role in the maintenance of leukemia stem cells in acute myeloid leukemia (AML) (PubMed:31827282). Acts by mediating acetylation of histone H3 at 'Lys-14' (H3K14ac), thereby facilitating the processivity of RNA polymerase II to maintain the high expression of key genes, such as HOXA9 and HOXA10 that help to sustain the functional properties of leukemia stem cells (PubMed:31827282). {ECO:0000269|PubMed:31827282}.
O95359 TACC2 S1958 ochoa Transforming acidic coiled-coil-containing protein 2 (Anti-Zuai-1) (AZU-1) Plays a role in the microtubule-dependent coupling of the nucleus and the centrosome. Involved in the processes that regulate centrosome-mediated interkinetic nuclear migration (INM) of neural progenitors (By similarity). May play a role in organizing centrosomal microtubules. May act as a tumor suppressor protein. May represent a tumor progression marker. {ECO:0000250, ECO:0000269|PubMed:10749935}.
P12270 TPR S2061 ochoa Nucleoprotein TPR (Megator) (NPC-associated intranuclear protein) (Translocated promoter region protein) Component of the nuclear pore complex (NPC), a complex required for the trafficking across the nuclear envelope. Functions as a scaffolding element in the nuclear phase of the NPC essential for normal nucleocytoplasmic transport of proteins and mRNAs, plays a role in the establishment of nuclear-peripheral chromatin compartmentalization in interphase, and in the mitotic spindle checkpoint signaling during mitosis. Involved in the quality control and retention of unspliced mRNAs in the nucleus; in association with NUP153, regulates the nuclear export of unspliced mRNA species bearing constitutive transport element (CTE) in a NXF1- and KHDRBS1-independent manner. Negatively regulates both the association of CTE-containing mRNA with large polyribosomes and translation initiation. Does not play any role in Rev response element (RRE)-mediated export of unspliced mRNAs. Implicated in nuclear export of mRNAs transcribed from heat shock gene promoters; associates both with chromatin in the HSP70 promoter and with mRNAs transcribed from this promoter under stress-induced conditions. Modulates the nucleocytoplasmic transport of activated MAPK1/ERK2 and huntingtin/HTT and may serve as a docking site for the XPO1/CRM1-mediated nuclear export complex. According to some authors, plays a limited role in the regulation of nuclear protein export (PubMed:11952838, PubMed:22253824). Also plays a role as a structural and functional element of the perinuclear chromatin distribution; involved in the formation and/or maintenance of NPC-associated perinuclear heterochromatin exclusion zones (HEZs). Finally, acts as a spatial regulator of the spindle-assembly checkpoint (SAC) response ensuring a timely and effective recruitment of spindle checkpoint proteins like MAD1L1 and MAD2L1 to unattached kinetochore during the metaphase-anaphase transition before chromosome congression. Its N-terminus is involved in activation of oncogenic kinases. {ECO:0000269|PubMed:11952838, ECO:0000269|PubMed:15654337, ECO:0000269|PubMed:17897941, ECO:0000269|PubMed:18794356, ECO:0000269|PubMed:18981471, ECO:0000269|PubMed:19273613, ECO:0000269|PubMed:20133940, ECO:0000269|PubMed:20407419, ECO:0000269|PubMed:21613532, ECO:0000269|PubMed:22253824, ECO:0000269|PubMed:9864356}.
P15336 ATF2 S321 ochoa Cyclic AMP-dependent transcription factor ATF-2 (cAMP-dependent transcription factor ATF-2) (Activating transcription factor 2) (Cyclic AMP-responsive element-binding protein 2) (CREB-2) (cAMP-responsive element-binding protein 2) (HB16) (cAMP response element-binding protein CRE-BP1) Transcriptional activator which regulates the transcription of various genes, including those involved in anti-apoptosis, cell growth, and DNA damage response. Dependent on its binding partner, binds to CRE (cAMP response element) consensus sequences (5'-TGACGTCA-3') or to AP-1 (activator protein 1) consensus sequences (5'-TGACTCA-3'). In the nucleus, contributes to global transcription and the DNA damage response, in addition to specific transcriptional activities that are related to cell development, proliferation and death. In the cytoplasm, interacts with and perturbs HK1- and VDAC1-containing complexes at the mitochondrial outer membrane, thereby impairing mitochondrial membrane potential, inducing mitochondrial leakage and promoting cell death. The phosphorylated form (mediated by ATM) plays a role in the DNA damage response and is involved in the ionizing radiation (IR)-induced S phase checkpoint control and in the recruitment of the MRN complex into the IR-induced foci (IRIF). Exhibits histone acetyltransferase (HAT) activity which specifically acetylates histones H2B and H4 in vitro (PubMed:10821277). In concert with CUL3 and RBX1, promotes the degradation of KAT5 thereby attenuating its ability to acetylate and activate ATM. Can elicit oncogenic or tumor suppressor activities depending on the tissue or cell type. {ECO:0000269|PubMed:10821277, ECO:0000269|PubMed:15916964, ECO:0000269|PubMed:18397884, ECO:0000269|PubMed:22304920}.
P18887 XRCC1 S418 ochoa DNA repair protein XRCC1 (X-ray repair cross-complementing protein 1) Scaffold protein involved in DNA single-strand break repair by mediating the assembly of DNA break repair protein complexes (PubMed:11163244, PubMed:28002403). Negatively regulates ADP-ribosyltransferase activity of PARP1 during base-excision repair in order to prevent excessive PARP1 activity (PubMed:28002403, PubMed:34102106, PubMed:34811483). Recognizes and binds poly-ADP-ribose chains: specifically binds auto-poly-ADP-ribosylated PARP1, limiting its activity (PubMed:14500814, PubMed:34102106, PubMed:34811483). {ECO:0000269|PubMed:11163244, ECO:0000269|PubMed:14500814, ECO:0000269|PubMed:28002403, ECO:0000269|PubMed:34102106, ECO:0000269|PubMed:34811483}.
P21333 FLNA S2537 ochoa Filamin-A (FLN-A) (Actin-binding protein 280) (ABP-280) (Alpha-filamin) (Endothelial actin-binding protein) (Filamin-1) (Non-muscle filamin) Promotes orthogonal branching of actin filaments and links actin filaments to membrane glycoproteins. Anchors various transmembrane proteins to the actin cytoskeleton and serves as a scaffold for a wide range of cytoplasmic signaling proteins. Interaction with FLNB may allow neuroblast migration from the ventricular zone into the cortical plate. Tethers cell surface-localized furin, modulates its rate of internalization and directs its intracellular trafficking (By similarity). Involved in ciliogenesis. Plays a role in cell-cell contacts and adherens junctions during the development of blood vessels, heart and brain organs. Plays a role in platelets morphology through interaction with SYK that regulates ITAM- and ITAM-like-containing receptor signaling, resulting in by platelet cytoskeleton organization maintenance (By similarity). During the axon guidance process, required for growth cone collapse induced by SEMA3A-mediated stimulation of neurons (PubMed:25358863). {ECO:0000250, ECO:0000250|UniProtKB:Q8BTM8, ECO:0000269|PubMed:22121117, ECO:0000269|PubMed:25358863}.
P23588 EIF4B S507 ochoa Eukaryotic translation initiation factor 4B (eIF-4B) Required for the binding of mRNA to ribosomes. Functions in close association with EIF4-F and EIF4-A. Binds near the 5'-terminal cap of mRNA in presence of EIF-4F and ATP. Promotes the ATPase activity and the ATP-dependent RNA unwinding activity of both EIF4-A and EIF4-F.
P39880 CUX1 S1227 ochoa Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (CDP/Cux p200) (Homeobox protein cux-1) [Cleaved into: CDP/Cux p110] Transcription factor involved in the control of neuronal differentiation in the brain. Regulates dendrite development and branching, and dendritic spine formation in cortical layers II-III. Also involved in the control of synaptogenesis. In addition, it has probably a broad role in mammalian development as a repressor of developmentally regulated gene expression. May act by preventing binding of positively-activing CCAAT factors to promoters. Component of nf-munr repressor; binds to the matrix attachment regions (MARs) (5' and 3') of the immunoglobulin heavy chain enhancer. Represses T-cell receptor (TCR) beta enhancer function by binding to MARbeta, an ATC-rich DNA sequence located upstream of the TCR beta enhancer. Binds to the TH enhancer; may require the basic helix-loop-helix protein TCF4 as a coactivator. {ECO:0000250|UniProtKB:P53564}.; FUNCTION: [CDP/Cux p110]: Plays a role in cell cycle progression, in particular at the G1/S transition. As cells progress into S phase, a fraction of CUX1 molecules is proteolytically processed into N-terminally truncated proteins of 110 kDa. While CUX1 only transiently binds to DNA and carries the CCAAT-displacement activity, CDP/Cux p110 makes a stable interaction with DNA and stimulates expression of genes such as POLA1. {ECO:0000269|PubMed:15099520}.
P42331 ARHGAP25 S407 ochoa Rho GTPase-activating protein 25 (Rho-type GTPase-activating protein 25) GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state. {ECO:0000250}.
P46013 MKI67 S185 ochoa Proliferation marker protein Ki-67 (Antigen identified by monoclonal antibody Ki-67) (Antigen KI-67) (Antigen Ki67) Protein that associates with the surface of mitotic chromosomes and acts both as a chromosome repellent during early mitosis and chromosome attractant during late mitosis (PubMed:27362226, PubMed:32879492, PubMed:35513709, PubMed:39153474). Required to maintain individual mitotic chromosomes dispersed in the cytoplasm following nuclear envelope disassembly (PubMed:27362226). During early mitosis, relocalizes from nucleoli to the chromosome surface where it forms extended brush structures that cover a substantial fraction of the chromosome surface (PubMed:27362226). The MKI67 brush structure prevents chromosomes from collapsing into a single chromatin mass by forming a steric and electrostatic charge barrier: the protein has a high net electrical charge and acts as a surfactant, dispersing chromosomes and enabling independent chromosome motility (PubMed:27362226). During mitotic anaphase, the MKI67 brush structure collapses and MKI67 switches from a chromosome repellent to a chromosome attractant to promote chromosome clustering and facilitate the exclusion of large cytoplasmic particles from the future nuclear space (PubMed:32879492, PubMed:39153474). Mechanistically, dephosphorylation during mitotic exit and simultaneous exposure of a conserved basic patch induce the RNA-dependent formation of a liquid-like condensed phase on the chromosome surface, promoting coalescence of neighboring chromosome surfaces and clustering of chromosomes (PubMed:39153474). Binds premature ribosomal RNAs during anaphase; promoting liquid-liquid phase separation (PubMed:28935370, PubMed:39153474). Binds DNA, with a preference for supercoiled DNA and AT-rich DNA (PubMed:10878551). Does not contribute to the internal structure of mitotic chromosomes (By similarity). May play a role in chromatin organization; it is however unclear whether it plays a direct role in chromatin organization or whether it is an indirect consequence of its function in mitotic chromosome (PubMed:24867636). {ECO:0000250|UniProtKB:E9PVX6, ECO:0000269|PubMed:10878551, ECO:0000269|PubMed:24867636, ECO:0000269|PubMed:27362226, ECO:0000269|PubMed:28935370, ECO:0000269|PubMed:32879492, ECO:0000269|PubMed:35513709, ECO:0000269|PubMed:39153474}.
P48634 PRRC2A S1115 ochoa Protein PRRC2A (HLA-B-associated transcript 2) (Large proline-rich protein BAT2) (Proline-rich and coiled-coil-containing protein 2A) (Protein G2) May play a role in the regulation of pre-mRNA splicing. {ECO:0000269|PubMed:14667819}.
P52948 NUP98 S897 ochoa Nuclear pore complex protein Nup98-Nup96 (EC 3.4.21.-) [Cleaved into: Nuclear pore complex protein Nup98 (98 kDa nucleoporin) (Nucleoporin Nup98) (Nup98); Nuclear pore complex protein Nup96 (96 kDa nucleoporin) (Nucleoporin Nup96) (Nup96)] Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance. NUP98 and NUP96 are involved in the bidirectional transport across the NPC (PubMed:33097660). May anchor NUP153 and TPR to the NPC. In cooperation with DHX9, plays a role in transcription and alternative splicing activation of a subset of genes (PubMed:28221134). Involved in the localization of DHX9 in discrete intranuclear foci (GLFG-body) (PubMed:28221134). {ECO:0000269|PubMed:15229283, ECO:0000269|PubMed:33097660}.; FUNCTION: (Microbial infection) Interacts with HIV-1 capsid protein P24 and nucleocapsid protein P7 and may thereby promote the integration of the virus in the host nucleus (in vitro) (PubMed:23523133). Binding affinity to HIV-1 CA-NC complexes bearing the capsid change Asn-74-Asp is reduced (in vitro) (PubMed:23523133). {ECO:0000269|PubMed:23523133}.
P67809 YBX1 S176 ochoa|psp Y-box-binding protein 1 (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (DNA-binding protein B) (DBPB) (Enhancer factor I subunit A) (EFI-A) (Nuclease-sensitive element-binding protein 1) (Y-box transcription factor) DNA- and RNA-binding protein involved in various processes, such as translational repression, RNA stabilization, mRNA splicing, DNA repair and transcription regulation (PubMed:10817758, PubMed:11698476, PubMed:14718551, PubMed:18809583, PubMed:31358969, PubMed:8188694). Predominantly acts as a RNA-binding protein: binds preferentially to the 5'-[CU]CUGCG-3' RNA motif and specifically recognizes mRNA transcripts modified by C5-methylcytosine (m5C) (PubMed:19561594, PubMed:31358969). Promotes mRNA stabilization: acts by binding to m5C-containing mRNAs and recruiting the mRNA stability maintainer ELAVL1, thereby preventing mRNA decay (PubMed:10817758, PubMed:11698476, PubMed:31358969). Component of the CRD-mediated complex that promotes MYC mRNA stability (PubMed:19029303). Contributes to the regulation of translation by modulating the interaction between the mRNA and eukaryotic initiation factors (By similarity). Plays a key role in RNA composition of extracellular exosomes by defining the sorting of small non-coding RNAs, such as tRNAs, Y RNAs, Vault RNAs and miRNAs (PubMed:27559612, PubMed:29073095). Probably sorts RNAs in exosomes by recognizing and binding C5-methylcytosine (m5C)-containing RNAs (PubMed:28341602, PubMed:29073095). Acts as a key effector of epidermal progenitors by preventing epidermal progenitor senescence: acts by regulating the translation of a senescence-associated subset of cytokine mRNAs, possibly by binding to m5C-containing mRNAs (PubMed:29712925). Also involved in pre-mRNA alternative splicing regulation: binds to splice sites in pre-mRNA and regulates splice site selection (PubMed:12604611). Binds to TSC22D1 transcripts, thereby inhibiting their translation and negatively regulating TGF-beta-mediated transcription of COL1A2 (By similarity). Also able to bind DNA: regulates transcription of the multidrug resistance gene MDR1 is enhanced in presence of the APEX1 acetylated form at 'Lys-6' and 'Lys-7' (PubMed:18809583). Binds to promoters that contain a Y-box (5'-CTGATTGGCCAA-3'), such as MDR1 and HLA class II genes (PubMed:18809583, PubMed:8188694). Promotes separation of DNA strands that contain mismatches or are modified by cisplatin (PubMed:14718551). Has endonucleolytic activity and can introduce nicks or breaks into double-stranded DNA, suggesting a role in DNA repair (PubMed:14718551). The secreted form acts as an extracellular mitogen and stimulates cell migration and proliferation (PubMed:19483673). {ECO:0000250|UniProtKB:P62960, ECO:0000250|UniProtKB:Q28618, ECO:0000269|PubMed:10817758, ECO:0000269|PubMed:11698476, ECO:0000269|PubMed:12604611, ECO:0000269|PubMed:14718551, ECO:0000269|PubMed:18809583, ECO:0000269|PubMed:19029303, ECO:0000269|PubMed:19483673, ECO:0000269|PubMed:19561594, ECO:0000269|PubMed:27559612, ECO:0000269|PubMed:28341602, ECO:0000269|PubMed:29073095, ECO:0000269|PubMed:29712925, ECO:0000269|PubMed:31358969, ECO:0000269|PubMed:8188694}.
P78559 MAP1A S570 ochoa Microtubule-associated protein 1A (MAP-1A) (Proliferation-related protein p80) [Cleaved into: MAP1A heavy chain; MAP1 light chain LC2] Structural protein involved in the filamentous cross-bridging between microtubules and other skeletal elements.
P80723 BASP1 S183 ochoa Brain acid soluble protein 1 (22 kDa neuronal tissue-enriched acidic protein) (Neuronal axonal membrane protein NAP-22) None
P80723 BASP1 S195 ochoa Brain acid soluble protein 1 (22 kDa neuronal tissue-enriched acidic protein) (Neuronal axonal membrane protein NAP-22) None
P80723 BASP1 S205 ochoa Brain acid soluble protein 1 (22 kDa neuronal tissue-enriched acidic protein) (Neuronal axonal membrane protein NAP-22) None
Q01082 SPTBN1 S2316 ochoa Spectrin beta chain, non-erythrocytic 1 (Beta-II spectrin) (Fodrin beta chain) (Spectrin, non-erythroid beta chain 1) Fodrin, which seems to be involved in secretion, interacts with calmodulin in a calcium-dependent manner and is thus candidate for the calcium-dependent movement of the cytoskeleton at the membrane. Plays a critical role in central nervous system development and function. {ECO:0000269|PubMed:34211179}.
Q01082 SPTBN1 S2319 ochoa Spectrin beta chain, non-erythrocytic 1 (Beta-II spectrin) (Fodrin beta chain) (Spectrin, non-erythroid beta chain 1) Fodrin, which seems to be involved in secretion, interacts with calmodulin in a calcium-dependent manner and is thus candidate for the calcium-dependent movement of the cytoskeleton at the membrane. Plays a critical role in central nervous system development and function. {ECO:0000269|PubMed:34211179}.
Q01814 ATP2B2 S1160 ochoa Plasma membrane calcium-transporting ATPase 2 (PMCA2) (EC 7.2.2.10) (Plasma membrane calcium ATPase isoform 2) (Plasma membrane calcium pump isoform 2) ATP-driven Ca(2+) ion pump involved in the maintenance of basal intracellular Ca(2+) levels in specialized cells of cerebellar circuit and vestibular and cochlear systems (PubMed:15829536, PubMed:17234811). Uses ATP as an energy source to transport cytosolic Ca(2+) ions across the plasma membrane to the extracellular compartment (PubMed:15829536, PubMed:17234811). Has fast activation and Ca(2+) clearance rate suited to control fast neuronal Ca(2+) dynamics. At parallel fiber to Purkinje neuron synapse, mediates presynaptic Ca(2+) efflux in response to climbing fiber-induced Ca(2+) rise. Provides for fast return of Ca(2+) concentrations back to their resting levels, ultimately contributing to long-term depression induction and motor learning (By similarity). Plays an essential role in hearing and balance (PubMed:15829536, PubMed:17234811). In cochlear hair cells, shuttles Ca(2+) ions from stereocilia to the endolymph and dissipates Ca(2+) transients generated by the opening of the mechanoelectrical transduction channels. Regulates Ca(2+) levels in the vestibular system, where it contributes to the formation of otoconia (PubMed:15829536, PubMed:17234811). In non-excitable cells, regulates Ca(2+) signaling through spatial control of Ca(2+) ions extrusion and dissipation of Ca(2+) transients generated by store-operated channels (PubMed:25690014). In lactating mammary gland, allows for the high content of Ca(2+) ions in the milk (By similarity). {ECO:0000250|UniProtKB:Q9R0K7, ECO:0000269|PubMed:15829536, ECO:0000269|PubMed:17234811, ECO:0000269|PubMed:25690014}.
Q05397 PTK2 S702 ochoa Focal adhesion kinase 1 (FADK 1) (EC 2.7.10.2) (Focal adhesion kinase-related nonkinase) (FRNK) (Protein phosphatase 1 regulatory subunit 71) (PPP1R71) (Protein-tyrosine kinase 2) (p125FAK) (pp125FAK) Non-receptor protein-tyrosine kinase that plays an essential role in regulating cell migration, adhesion, spreading, reorganization of the actin cytoskeleton, formation and disassembly of focal adhesions and cell protrusions, cell cycle progression, cell proliferation and apoptosis. Required for early embryonic development and placenta development. Required for embryonic angiogenesis, normal cardiomyocyte migration and proliferation, and normal heart development. Regulates axon growth and neuronal cell migration, axon branching and synapse formation; required for normal development of the nervous system. Plays a role in osteogenesis and differentiation of osteoblasts. Functions in integrin signal transduction, but also in signaling downstream of numerous growth factor receptors, G-protein coupled receptors (GPCR), EPHA2, netrin receptors and LDL receptors. Forms multisubunit signaling complexes with SRC and SRC family members upon activation; this leads to the phosphorylation of additional tyrosine residues, creating binding sites for scaffold proteins, effectors and substrates. Regulates numerous signaling pathways. Promotes activation of phosphatidylinositol 3-kinase and the AKT1 signaling cascade. Promotes activation of MAPK1/ERK2, MAPK3/ERK1 and the MAP kinase signaling cascade. Promotes localized and transient activation of guanine nucleotide exchange factors (GEFs) and GTPase-activating proteins (GAPs), and thereby modulates the activity of Rho family GTPases. Signaling via CAS family members mediates activation of RAC1. Phosphorylates NEDD9 following integrin stimulation (PubMed:9360983). Recruits the ubiquitin ligase MDM2 to P53/TP53 in the nucleus, and thereby regulates P53/TP53 activity, P53/TP53 ubiquitination and proteasomal degradation. Phosphorylates SRC; this increases SRC kinase activity. Phosphorylates ACTN1, ARHGEF7, GRB7, RET and WASL. Promotes phosphorylation of PXN and STAT1; most likely PXN and STAT1 are phosphorylated by a SRC family kinase that is recruited to autophosphorylated PTK2/FAK1, rather than by PTK2/FAK1 itself. Promotes phosphorylation of BCAR1; GIT2 and SHC1; this requires both SRC and PTK2/FAK1. Promotes phosphorylation of BMX and PIK3R1. Isoform 6 (FRNK) does not contain a kinase domain and inhibits PTK2/FAK1 phosphorylation and signaling. Its enhanced expression can attenuate the nuclear accumulation of LPXN and limit its ability to enhance serum response factor (SRF)-dependent gene transcription. {ECO:0000269|PubMed:10655584, ECO:0000269|PubMed:11331870, ECO:0000269|PubMed:11980671, ECO:0000269|PubMed:15166238, ECO:0000269|PubMed:15561106, ECO:0000269|PubMed:15895076, ECO:0000269|PubMed:16919435, ECO:0000269|PubMed:16927379, ECO:0000269|PubMed:17395594, ECO:0000269|PubMed:17431114, ECO:0000269|PubMed:17968709, ECO:0000269|PubMed:18006843, ECO:0000269|PubMed:18206965, ECO:0000269|PubMed:18256281, ECO:0000269|PubMed:18292575, ECO:0000269|PubMed:18497331, ECO:0000269|PubMed:18677107, ECO:0000269|PubMed:19138410, ECO:0000269|PubMed:19147981, ECO:0000269|PubMed:19224453, ECO:0000269|PubMed:20332118, ECO:0000269|PubMed:20495381, ECO:0000269|PubMed:21454698, ECO:0000269|PubMed:9360983}.; FUNCTION: [Isoform 6]: Isoform 6 (FRNK) does not contain a kinase domain and inhibits PTK2/FAK1 phosphorylation and signaling. Its enhanced expression can attenuate the nuclear accumulation of LPXN and limit its ability to enhance serum response factor (SRF)-dependent gene transcription. {ECO:0000269|PubMed:20109444}.
Q08211 DHX9 S77 ochoa ATP-dependent RNA helicase A (EC 3.6.4.13) (DEAH box protein 9) (DExH-box helicase 9) (Leukophysin) (LKP) (Nuclear DNA helicase II) (NDH II) (RNA helicase A) Multifunctional ATP-dependent nucleic acid helicase that unwinds DNA and RNA in a 3' to 5' direction and that plays important roles in many processes, such as DNA replication, transcriptional activation, post-transcriptional RNA regulation, mRNA translation and RNA-mediated gene silencing (PubMed:11416126, PubMed:12711669, PubMed:15355351, PubMed:16680162, PubMed:17531811, PubMed:20669935, PubMed:21561811, PubMed:24049074, PubMed:24990949, PubMed:25062910, PubMed:28221134, PubMed:9111062, PubMed:37467750). Requires a 3'-single-stranded tail as entry site for acid nuclei unwinding activities as well as the binding and hydrolyzing of any of the four ribo- or deoxyribo-nucleotide triphosphates (NTPs) (PubMed:1537828). Unwinds numerous nucleic acid substrates such as double-stranded (ds) DNA and RNA, DNA:RNA hybrids, DNA and RNA forks composed of either partially complementary DNA duplexes or DNA:RNA hybrids, respectively, and also DNA and RNA displacement loops (D- and R-loops), triplex-helical DNA (H-DNA) structure and DNA and RNA-based G-quadruplexes (PubMed:20669935, PubMed:21561811, PubMed:24049074). Binds dsDNA, single-stranded DNA (ssDNA), dsRNA, ssRNA and poly(A)-containing RNA (PubMed:10198287, PubMed:9111062). Also binds to circular dsDNA or dsRNA of either linear and/or circular forms and stimulates the relaxation of supercoiled DNAs catalyzed by topoisomerase TOP2A (PubMed:12711669). Plays a role in DNA replication at origins of replication and cell cycle progression (PubMed:24990949). Plays a role as a transcriptional coactivator acting as a bridging factor between polymerase II holoenzyme and transcription factors or cofactors, such as BRCA1, CREBBP, RELA and SMN1 (PubMed:11038348, PubMed:11149922, PubMed:11416126, PubMed:15355351, PubMed:28221134, PubMed:9323138, PubMed:9662397). Binds to the CDKN2A promoter (PubMed:11038348). Plays several roles in post-transcriptional regulation of gene expression (PubMed:28221134, PubMed:28355180). In cooperation with NUP98, promotes pre-mRNA alternative splicing activities of a subset of genes (PubMed:11402034, PubMed:16680162, PubMed:28221134, PubMed:28355180). As component of a large PER complex, is involved in the negative regulation of 3' transcriptional termination of circadian target genes such as PER1 and NR1D1 and the control of the circadian rhythms (By similarity). Also acts as a nuclear resolvase that is able to bind and neutralize harmful massive secondary double-stranded RNA structures formed by inverted-repeat Alu retrotransposon elements that are inserted and transcribed as parts of genes during the process of gene transposition (PubMed:28355180). Involved in the positive regulation of nuclear export of constitutive transport element (CTE)-containing unspliced mRNA (PubMed:10924507, PubMed:11402034, PubMed:9162007). Component of the coding region determinant (CRD)-mediated complex that promotes cytoplasmic MYC mRNA stability (PubMed:19029303). Plays a role in mRNA translation (PubMed:28355180). Positively regulates translation of selected mRNAs through its binding to post-transcriptional control element (PCE) in the 5'-untranslated region (UTR) (PubMed:16680162). Involved with LARP6 in the translation stimulation of type I collagen mRNAs for CO1A1 and CO1A2 through binding of a specific stem-loop structure in their 5'-UTRs (PubMed:22190748). Stimulates LIN28A-dependent mRNA translation probably by facilitating ribonucleoprotein remodeling during the process of translation (PubMed:21247876). Plays also a role as a small interfering (siRNA)-loading factor involved in the RNA-induced silencing complex (RISC) loading complex (RLC) assembly, and hence functions in the RISC-mediated gene silencing process (PubMed:17531811). Binds preferentially to short double-stranded RNA, such as those produced during rotavirus intestinal infection (PubMed:28636595). This interaction may mediate NLRP9 inflammasome activation and trigger inflammatory response, including IL18 release and pyroptosis (PubMed:28636595). Finally, mediates the attachment of heterogeneous nuclear ribonucleoproteins (hnRNPs) to actin filaments in the nucleus (PubMed:11687588). {ECO:0000250|UniProtKB:O70133, ECO:0000269|PubMed:10198287, ECO:0000269|PubMed:10924507, ECO:0000269|PubMed:11038348, ECO:0000269|PubMed:11149922, ECO:0000269|PubMed:11402034, ECO:0000269|PubMed:11416126, ECO:0000269|PubMed:11687588, ECO:0000269|PubMed:12711669, ECO:0000269|PubMed:15355351, ECO:0000269|PubMed:1537828, ECO:0000269|PubMed:16680162, ECO:0000269|PubMed:17531811, ECO:0000269|PubMed:19029303, ECO:0000269|PubMed:20669935, ECO:0000269|PubMed:21247876, ECO:0000269|PubMed:21561811, ECO:0000269|PubMed:22190748, ECO:0000269|PubMed:24049074, ECO:0000269|PubMed:24990949, ECO:0000269|PubMed:25062910, ECO:0000269|PubMed:28221134, ECO:0000269|PubMed:28355180, ECO:0000269|PubMed:28636595, ECO:0000269|PubMed:37467750, ECO:0000269|PubMed:9111062, ECO:0000269|PubMed:9162007, ECO:0000269|PubMed:9323138, ECO:0000269|PubMed:9662397}.; FUNCTION: (Microbial infection) Plays a role in HIV-1 replication and virion infectivity (PubMed:11096080, PubMed:19229320, PubMed:25149208, PubMed:27107641). Enhances HIV-1 transcription by facilitating the binding of RNA polymerase II holoenzyme to the proviral DNA (PubMed:11096080, PubMed:25149208). Binds (via DRBM domain 2) to the HIV-1 TAR RNA and stimulates HIV-1 transcription of transactivation response element (TAR)-containing mRNAs (PubMed:11096080, PubMed:9892698). Involved also in HIV-1 mRNA splicing and transport (PubMed:25149208). Positively regulates HIV-1 gag mRNA translation, through its binding to post-transcriptional control element (PCE) in the 5'-untranslated region (UTR) (PubMed:16680162). Binds (via DRBM domains) to a HIV-1 double-stranded RNA region of the primer binding site (PBS)-segment of the 5'-UTR, and hence stimulates DHX9 incorporation into virions and virion infectivity (PubMed:27107641). Also plays a role as a cytosolic viral MyD88-dependent DNA and RNA sensors in plasmacytoid dendritic cells (pDCs), and hence induce antiviral innate immune responses (PubMed:20696886, PubMed:21957149). Binds (via the OB-fold region) to viral single-stranded DNA unmethylated C-phosphate-G (CpG) oligonucleotide (PubMed:20696886). {ECO:0000269|PubMed:11096080, ECO:0000269|PubMed:16680162, ECO:0000269|PubMed:19229320, ECO:0000269|PubMed:20696886, ECO:0000269|PubMed:21957149, ECO:0000269|PubMed:25149208, ECO:0000269|PubMed:27107641, ECO:0000269|PubMed:9892698}.
Q12872 SFSWAP S619 ochoa Splicing factor, suppressor of white-apricot homolog (Splicing factor, arginine/serine-rich 8) (Suppressor of white apricot protein homolog) Plays a role as an alternative splicing regulator. Regulate its own expression at the level of RNA processing. Also regulates the splicing of fibronectin and CD45 genes. May act, at least in part, by interaction with other R/S-containing splicing factors. Represses the splicing of MAPT/Tau exon 10. {ECO:0000269|PubMed:8940107}.
Q13112 CHAF1B S529 ochoa Chromatin assembly factor 1 subunit B (CAF-1 subunit B) (Chromatin assembly factor I p60 subunit) (CAF-I 60 kDa subunit) (CAF-I p60) (M-phase phosphoprotein 7) Acts as a component of the histone chaperone complex chromatin assembly factor 1 (CAF-1), which assembles histone octamers onto DNA during replication and repair. CAF-1 performs the first step of the nucleosome assembly process, bringing newly synthesized histones H3 and H4 to replicating DNA; histones H2A/H2B can bind to this chromatin precursor subsequent to DNA replication to complete the histone octamer. {ECO:0000269|PubMed:9813080}.
Q13796 SHROOM2 S933 ochoa Protein Shroom2 (Apical-like protein) (Protein APXL) May be involved in endothelial cell morphology changes during cell spreading. In the retinal pigment epithelium, may regulate the biogenesis of melanosomes and promote their association with the apical cell surface by inducing gamma-tubulin redistribution (By similarity). {ECO:0000250}.
Q14147 DHX34 S749 ochoa Probable ATP-dependent RNA helicase DHX34 (EC 3.6.4.13) (DEAH box protein 34) (DExH-box helicase 34) Probable ATP-binding RNA helicase required for nonsense-mediated decay (NMD) degradation of mRNA transcripts containing premature stop codons (PubMed:25220460, PubMed:33205750). Promotes the phosphorylation of UPF1 along with its interaction with key NMD pathway proteins UPF2 and EIF4A3 (PubMed:25220460). Interaction with the RUVBL1-RUVBL2 complex results in loss of nucleotide binding ability and ATP hydrolysis of the complex (PubMed:33205750). Negatively regulates the nucleotide binding ability and ATP hydrolysis of the RUVBL1-RUVBL2 complex via induction of N-terminus conformation changes of the RUVBL2 subunits (PubMed:33205750). {ECO:0000269|PubMed:25220460, ECO:0000269|PubMed:33205750}.
Q14202 ZMYM3 S37 ochoa Zinc finger MYM-type protein 3 (Zinc finger protein 261) Plays a role in the regulation of cell morphology and cytoskeletal organization. {ECO:0000269|PubMed:21834987}.
Q14676 MDC1 S1095 ochoa Mediator of DNA damage checkpoint protein 1 (Nuclear factor with BRCT domains 1) Histone reader protein required for checkpoint-mediated cell cycle arrest in response to DNA damage within both the S phase and G2/M phases of the cell cycle (PubMed:12475977, PubMed:12499369, PubMed:12551934, PubMed:12607003, PubMed:12607004, PubMed:12607005, PubMed:12611903, PubMed:14695167, PubMed:15201865, PubMed:15377652, PubMed:16049003, PubMed:16377563, PubMed:30898438). Specifically recognizes and binds histone H2AX phosphorylated at 'Ser-139', a marker of DNA damage, serving as a scaffold for the recruitment of DNA repair and signal transduction proteins to discrete foci of DNA damage sites (PubMed:12607005, PubMed:15201865, PubMed:16049003, PubMed:16377563, PubMed:30898438). Also required for downstream events subsequent to the recruitment of these proteins (PubMed:12607005, PubMed:15201865, PubMed:16049003, PubMed:16377563, PubMed:18582474). These include phosphorylation and activation of the ATM, CHEK1 and CHEK2 kinases, and stabilization of TP53/p53 and apoptosis (PubMed:12499369, PubMed:12551934, PubMed:12607004). ATM and CHEK2 may also be activated independently by a parallel pathway mediated by TP53BP1 (PubMed:12499369, PubMed:12551934, PubMed:12607004). Required for chromosomal stability during mitosis by promoting recruitment of TOPBP1 to DNA double strand breaks (DSBs): TOPBP1 forms filamentous assemblies that bridge MDC1 and tether broken chromosomes during mitosis (PubMed:30898438). Required for the repair of DSBs via homologous recombination by promoting recruitment of NBN component of the MRN complex to DSBs (PubMed:18411307, PubMed:18582474, PubMed:18583988, PubMed:18678890). {ECO:0000269|PubMed:12475977, ECO:0000269|PubMed:12499369, ECO:0000269|PubMed:12551934, ECO:0000269|PubMed:12607003, ECO:0000269|PubMed:12607004, ECO:0000269|PubMed:12607005, ECO:0000269|PubMed:12611903, ECO:0000269|PubMed:14695167, ECO:0000269|PubMed:15201865, ECO:0000269|PubMed:15377652, ECO:0000269|PubMed:16049003, ECO:0000269|PubMed:16377563, ECO:0000269|PubMed:18411307, ECO:0000269|PubMed:18582474, ECO:0000269|PubMed:18583988, ECO:0000269|PubMed:18678890, ECO:0000269|PubMed:30898438}.
Q14980 NUMA1 S2003 ochoa Nuclear mitotic apparatus protein 1 (Nuclear matrix protein-22) (NMP-22) (Nuclear mitotic apparatus protein) (NuMA protein) (SP-H antigen) Microtubule (MT)-binding protein that plays a role in the formation and maintenance of the spindle poles and the alignement and the segregation of chromosomes during mitotic cell division (PubMed:17172455, PubMed:19255246, PubMed:24996901, PubMed:26195665, PubMed:27462074, PubMed:7769006). Functions to tether the minus ends of MTs at the spindle poles, which is critical for the establishment and maintenance of the spindle poles (PubMed:11956313, PubMed:12445386). Plays a role in the establishment of the mitotic spindle orientation during metaphase and elongation during anaphase in a dynein-dynactin-dependent manner (PubMed:23870127, PubMed:24109598, PubMed:24996901, PubMed:26765568). In metaphase, part of a ternary complex composed of GPSM2 and G(i) alpha proteins, that regulates the recruitment and anchorage of the dynein-dynactin complex in the mitotic cell cortex regions situated above the two spindle poles, and hence regulates the correct oritentation of the mitotic spindle (PubMed:22327364, PubMed:23027904, PubMed:23921553). During anaphase, mediates the recruitment and accumulation of the dynein-dynactin complex at the cell membrane of the polar cortical region through direct association with phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2), and hence participates in the regulation of the spindle elongation and chromosome segregation (PubMed:22327364, PubMed:23921553, PubMed:24371089, PubMed:24996901). Also binds to other polyanionic phosphoinositides, such as phosphatidylinositol 3-phosphate (PIP), lysophosphatidic acid (LPA) and phosphatidylinositol triphosphate (PIP3), in vitro (PubMed:24371089, PubMed:24996901). Also required for proper orientation of the mitotic spindle during asymmetric cell divisions (PubMed:21816348). Plays a role in mitotic MT aster assembly (PubMed:11163243, PubMed:11229403, PubMed:12445386). Involved in anastral spindle assembly (PubMed:25657325). Positively regulates TNKS protein localization to spindle poles in mitosis (PubMed:16076287). Highly abundant component of the nuclear matrix where it may serve a non-mitotic structural role, occupies the majority of the nuclear volume (PubMed:10075938). Required for epidermal differentiation and hair follicle morphogenesis (By similarity). {ECO:0000250|UniProtKB:E9Q7G0, ECO:0000269|PubMed:11163243, ECO:0000269|PubMed:11229403, ECO:0000269|PubMed:11956313, ECO:0000269|PubMed:12445386, ECO:0000269|PubMed:16076287, ECO:0000269|PubMed:17172455, ECO:0000269|PubMed:19255246, ECO:0000269|PubMed:22327364, ECO:0000269|PubMed:23027904, ECO:0000269|PubMed:23870127, ECO:0000269|PubMed:23921553, ECO:0000269|PubMed:24109598, ECO:0000269|PubMed:24371089, ECO:0000269|PubMed:24996901, ECO:0000269|PubMed:25657325, ECO:0000269|PubMed:26195665, ECO:0000269|PubMed:26765568, ECO:0000269|PubMed:27462074, ECO:0000269|PubMed:7769006, ECO:0000305|PubMed:10075938, ECO:0000305|PubMed:21816348}.
Q15811 ITSN1 S989 ochoa Intersectin-1 (SH3 domain-containing protein 1A) (SH3P17) Adapter protein that provides a link between the endocytic membrane traffic and the actin assembly machinery (PubMed:11584276, PubMed:29887380). Acts as a guanine nucleotide exchange factor (GEF) for CDC42, and thereby stimulates actin nucleation mediated by WASL and the ARP2/3 complex (PubMed:11584276). Plays a role in the assembly and maturation of clathrin-coated vesicles (By similarity). Recruits FCHSD2 to clathrin-coated pits (PubMed:29887380). Involved in endocytosis of activated EGFR, and probably also other growth factor receptors (By similarity). Involved in endocytosis of integrin beta-1 (ITGB1) and transferrin receptor (TFR); internalization of ITGB1 as DAB2-dependent cargo but not TFR may involve association with DAB2 (PubMed:22648170). Promotes ubiquitination and subsequent degradation of EGFR, and thereby contributes to the down-regulation of EGFR-dependent signaling pathways. In chromaffin cells, required for normal exocytosis of catecholamines. Required for rapid replenishment of release-ready synaptic vesicles at presynaptic active zones (By similarity). Inhibits ARHGAP31 activity toward RAC1 (PubMed:11744688). {ECO:0000250|UniProtKB:Q9WVE9, ECO:0000250|UniProtKB:Q9Z0R4, ECO:0000269|PubMed:11584276, ECO:0000269|PubMed:11744688, ECO:0000269|PubMed:22648170, ECO:0000269|PubMed:29887380}.; FUNCTION: [Isoform 1]: Plays a role in synaptic vesicle endocytosis in brain neurons. {ECO:0000250|UniProtKB:Q9Z0R4}.
Q6P2E9 EDC4 S820 ochoa Enhancer of mRNA-decapping protein 4 (Autoantigen Ge-1) (Autoantigen RCD-8) (Human enhancer of decapping large subunit) (Hedls) In the process of mRNA degradation, seems to play a role in mRNA decapping. Component of a complex containing DCP2 and DCP1A which functions in decapping of ARE-containing mRNAs. Promotes complex formation between DCP1A and DCP2. Enhances the catalytic activity of DCP2 (in vitro). {ECO:0000269|PubMed:16364915}.
Q6P2E9 EDC4 S892 ochoa Enhancer of mRNA-decapping protein 4 (Autoantigen Ge-1) (Autoantigen RCD-8) (Human enhancer of decapping large subunit) (Hedls) In the process of mRNA degradation, seems to play a role in mRNA decapping. Component of a complex containing DCP2 and DCP1A which functions in decapping of ARE-containing mRNAs. Promotes complex formation between DCP1A and DCP2. Enhances the catalytic activity of DCP2 (in vitro). {ECO:0000269|PubMed:16364915}.
Q6P996 PDXDC1 S748 ochoa Pyridoxal-dependent decarboxylase domain-containing protein 1 (EC 4.1.1.-) None
Q6PJE2 POMZP3 S29 ochoa POM121 and ZP3 fusion protein (POM-ZP3) None
Q6PJG2 MIDEAS S645 ochoa Mitotic deacetylase-associated SANT domain protein (ELM2 and SANT domain-containing protein 1) None
Q6PKG0 LARP1 S291 ochoa La-related protein 1 (La ribonucleoprotein domain family member 1) RNA-binding protein that regulates the translation of specific target mRNA species downstream of the mTORC1 complex, in function of growth signals and nutrient availability (PubMed:20430826, PubMed:23711370, PubMed:24532714, PubMed:25940091, PubMed:28650797, PubMed:28673543, PubMed:29244122). Interacts on the one hand with the 3' poly-A tails that are present in all mRNA molecules, and on the other hand with the 7-methylguanosine cap structure of mRNAs containing a 5' terminal oligopyrimidine (5'TOP) motif, which is present in mRNAs encoding ribosomal proteins and several components of the translation machinery (PubMed:23711370, PubMed:25940091, PubMed:26206669, PubMed:28379136, PubMed:28650797, PubMed:29244122). The interaction with the 5' end of mRNAs containing a 5'TOP motif leads to translational repression by preventing the binding of EIF4G1 (PubMed:25940091, PubMed:28379136, PubMed:28650797, PubMed:29244122). When mTORC1 is activated, LARP1 is phosphorylated and dissociates from the 5' untranslated region (UTR) of mRNA (PubMed:25940091, PubMed:28650797). Does not prevent binding of EIF4G1 to mRNAs that lack a 5'TOP motif (PubMed:28379136). Interacts with the free 40S ribosome subunit and with ribosomes, both monosomes and polysomes (PubMed:20430826, PubMed:24532714, PubMed:25940091, PubMed:28673543). Under normal nutrient availability, interacts primarily with the 3' untranslated region (UTR) of mRNAs encoding ribosomal proteins and increases protein synthesis (PubMed:23711370, PubMed:28650797). Associates with actively translating ribosomes and stimulates translation of mRNAs containing a 5'TOP motif, thereby regulating protein synthesis, and as a consequence, cell growth and proliferation (PubMed:20430826, PubMed:24532714). Stabilizes mRNAs species with a 5'TOP motif, which is required to prevent apoptosis (PubMed:20430826, PubMed:23711370, PubMed:25940091, PubMed:28673543). {ECO:0000269|PubMed:20430826, ECO:0000269|PubMed:23711370, ECO:0000269|PubMed:24532714, ECO:0000269|PubMed:25940091, ECO:0000269|PubMed:26206669, ECO:0000269|PubMed:28379136, ECO:0000269|PubMed:28650797, ECO:0000269|PubMed:28673543, ECO:0000269|PubMed:29244122}.; FUNCTION: (Microbial infection) Positively regulates the replication of dengue virus (DENV). {ECO:0000269|PubMed:26735137}.
Q6PKG0 LARP1 S293 ochoa La-related protein 1 (La ribonucleoprotein domain family member 1) RNA-binding protein that regulates the translation of specific target mRNA species downstream of the mTORC1 complex, in function of growth signals and nutrient availability (PubMed:20430826, PubMed:23711370, PubMed:24532714, PubMed:25940091, PubMed:28650797, PubMed:28673543, PubMed:29244122). Interacts on the one hand with the 3' poly-A tails that are present in all mRNA molecules, and on the other hand with the 7-methylguanosine cap structure of mRNAs containing a 5' terminal oligopyrimidine (5'TOP) motif, which is present in mRNAs encoding ribosomal proteins and several components of the translation machinery (PubMed:23711370, PubMed:25940091, PubMed:26206669, PubMed:28379136, PubMed:28650797, PubMed:29244122). The interaction with the 5' end of mRNAs containing a 5'TOP motif leads to translational repression by preventing the binding of EIF4G1 (PubMed:25940091, PubMed:28379136, PubMed:28650797, PubMed:29244122). When mTORC1 is activated, LARP1 is phosphorylated and dissociates from the 5' untranslated region (UTR) of mRNA (PubMed:25940091, PubMed:28650797). Does not prevent binding of EIF4G1 to mRNAs that lack a 5'TOP motif (PubMed:28379136). Interacts with the free 40S ribosome subunit and with ribosomes, both monosomes and polysomes (PubMed:20430826, PubMed:24532714, PubMed:25940091, PubMed:28673543). Under normal nutrient availability, interacts primarily with the 3' untranslated region (UTR) of mRNAs encoding ribosomal proteins and increases protein synthesis (PubMed:23711370, PubMed:28650797). Associates with actively translating ribosomes and stimulates translation of mRNAs containing a 5'TOP motif, thereby regulating protein synthesis, and as a consequence, cell growth and proliferation (PubMed:20430826, PubMed:24532714). Stabilizes mRNAs species with a 5'TOP motif, which is required to prevent apoptosis (PubMed:20430826, PubMed:23711370, PubMed:25940091, PubMed:28673543). {ECO:0000269|PubMed:20430826, ECO:0000269|PubMed:23711370, ECO:0000269|PubMed:24532714, ECO:0000269|PubMed:25940091, ECO:0000269|PubMed:26206669, ECO:0000269|PubMed:28379136, ECO:0000269|PubMed:28650797, ECO:0000269|PubMed:28673543, ECO:0000269|PubMed:29244122}.; FUNCTION: (Microbial infection) Positively regulates the replication of dengue virus (DENV). {ECO:0000269|PubMed:26735137}.
Q6PKG0 LARP1 Y862 ochoa La-related protein 1 (La ribonucleoprotein domain family member 1) RNA-binding protein that regulates the translation of specific target mRNA species downstream of the mTORC1 complex, in function of growth signals and nutrient availability (PubMed:20430826, PubMed:23711370, PubMed:24532714, PubMed:25940091, PubMed:28650797, PubMed:28673543, PubMed:29244122). Interacts on the one hand with the 3' poly-A tails that are present in all mRNA molecules, and on the other hand with the 7-methylguanosine cap structure of mRNAs containing a 5' terminal oligopyrimidine (5'TOP) motif, which is present in mRNAs encoding ribosomal proteins and several components of the translation machinery (PubMed:23711370, PubMed:25940091, PubMed:26206669, PubMed:28379136, PubMed:28650797, PubMed:29244122). The interaction with the 5' end of mRNAs containing a 5'TOP motif leads to translational repression by preventing the binding of EIF4G1 (PubMed:25940091, PubMed:28379136, PubMed:28650797, PubMed:29244122). When mTORC1 is activated, LARP1 is phosphorylated and dissociates from the 5' untranslated region (UTR) of mRNA (PubMed:25940091, PubMed:28650797). Does not prevent binding of EIF4G1 to mRNAs that lack a 5'TOP motif (PubMed:28379136). Interacts with the free 40S ribosome subunit and with ribosomes, both monosomes and polysomes (PubMed:20430826, PubMed:24532714, PubMed:25940091, PubMed:28673543). Under normal nutrient availability, interacts primarily with the 3' untranslated region (UTR) of mRNAs encoding ribosomal proteins and increases protein synthesis (PubMed:23711370, PubMed:28650797). Associates with actively translating ribosomes and stimulates translation of mRNAs containing a 5'TOP motif, thereby regulating protein synthesis, and as a consequence, cell growth and proliferation (PubMed:20430826, PubMed:24532714). Stabilizes mRNAs species with a 5'TOP motif, which is required to prevent apoptosis (PubMed:20430826, PubMed:23711370, PubMed:25940091, PubMed:28673543). {ECO:0000269|PubMed:20430826, ECO:0000269|PubMed:23711370, ECO:0000269|PubMed:24532714, ECO:0000269|PubMed:25940091, ECO:0000269|PubMed:26206669, ECO:0000269|PubMed:28379136, ECO:0000269|PubMed:28650797, ECO:0000269|PubMed:28673543, ECO:0000269|PubMed:29244122}.; FUNCTION: (Microbial infection) Positively regulates the replication of dengue virus (DENV). {ECO:0000269|PubMed:26735137}.
Q6RW13 AGTRAP S138 ochoa Type-1 angiotensin II receptor-associated protein (AT1 receptor-associated protein) Appears to be a negative regulator of type-1 angiotensin II receptor-mediated signaling by regulating receptor internalization as well as mechanism of receptor desensitization such as phosphorylation. Also induces a decrease in cell proliferation and angiotensin II-stimulated transcriptional activity. {ECO:0000269|PubMed:12960423}.
Q6ZRS2 SRCAP S2883 ochoa Helicase SRCAP (EC 3.6.4.-) (Domino homolog 2) (Snf2-related CBP activator) Catalytic component of the SRCAP complex which mediates the ATP-dependent exchange of histone H2AZ/H2B dimers for nucleosomal H2A/H2B, leading to transcriptional regulation of selected genes by chromatin remodeling. Acts as a coactivator for CREB-mediated transcription, steroid receptor-mediated transcription, and Notch-mediated transcription. {ECO:0000269|PubMed:10347196, ECO:0000269|PubMed:11522779, ECO:0000269|PubMed:14500758, ECO:0000269|PubMed:16024792, ECO:0000269|PubMed:16634648, ECO:0000269|PubMed:17617668}.
Q7L590 MCM10 S93 ochoa Protein MCM10 homolog (HsMCM10) Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication. Additionally, plays a role in preventing DNA damage during replication. Key effector of the RBBP6 and ZBTB38-mediated regulation of DNA-replication and common fragile sites stability; acts as a direct target of transcriptional repression by ZBTB38 (PubMed:24726359). {ECO:0000269|PubMed:11095689, ECO:0000269|PubMed:15136575, ECO:0000269|PubMed:17699597, ECO:0000269|PubMed:19608746, ECO:0000269|PubMed:24726359, ECO:0000269|PubMed:32865517}.
Q7Z2K8 GPRIN1 S118 ochoa G protein-regulated inducer of neurite outgrowth 1 (GRIN1) May be involved in neurite outgrowth. {ECO:0000250}.
Q86VP1 TAX1BP1 S694 ochoa Tax1-binding protein 1 (TRAF6-binding protein) Ubiquitin-binding adapter that participates in inflammatory, antiviral and innate immune processes as well as selective autophagy regulation (PubMed:29940186, PubMed:30459273, PubMed:30909570). Plays a key role in the negative regulation of NF-kappa-B and IRF3 signalings by acting as an adapter for the ubiquitin-editing enzyme A20/TNFAIP3 to bind and inactivate its substrates (PubMed:17703191). Disrupts the interactions between the E3 ubiquitin ligase TRAF3 and TBK1/IKBKE to attenuate 'Lys63'-linked polyubiquitination of TBK1 and thereby IFN-beta production (PubMed:21885437). Also recruits A20/TNFAIP3 to ubiquitinated signaling proteins TRAF6 and RIPK1, leading to their deubiquitination and disruption of IL-1 and TNF-induced NF-kappa-B signaling pathways (PubMed:17703191). Inhibits virus-induced apoptosis by inducing the 'Lys-48'-linked polyubiquitination and degradation of MAVS via recruitment of the E3 ligase ITCH, thereby attenuating MAVS-mediated apoptosis signaling (PubMed:27736772). As a macroautophagy/autophagy receptor, facilitates the xenophagic clearance of pathogenic bacteria such as Salmonella typhimurium and Mycobacterium tuberculosis (PubMed:26451915). Upon NBR1 recruitment to the SQSTM1-ubiquitin condensates, acts as the major recruiter of RB1CC1 to these ubiquitin condensates to promote their autophagic degradation (PubMed:33226137, PubMed:34471133). Mediates the autophagic degradation of other substrates including TICAM1 (PubMed:28898289). {ECO:0000269|PubMed:10435631, ECO:0000269|PubMed:10920205, ECO:0000269|PubMed:17703191, ECO:0000269|PubMed:21885437, ECO:0000269|PubMed:26451915, ECO:0000269|PubMed:27736772, ECO:0000269|PubMed:28898289, ECO:0000269|PubMed:29940186, ECO:0000269|PubMed:30459273, ECO:0000269|PubMed:30909570, ECO:0000269|PubMed:33226137, ECO:0000269|PubMed:34471133}.
Q86VP3 PACS2 S340 ochoa Phosphofurin acidic cluster sorting protein 2 (PACS-2) (PACS1-like protein) Multifunctional sorting protein that controls the endoplasmic reticulum (ER)-mitochondria communication, including the apposition of mitochondria with the ER and ER homeostasis. In addition, in response to apoptotic inducer, translocates BIB to mitochondria, which initiates a sequence of events including the formation of mitochondrial truncated BID, the release of cytochrome c, the activation of caspase-3 thereby causing cell death. May also be involved in ion channel trafficking, directing acidic cluster-containing ion channels to distinct subcellular compartments. {ECO:0000269|PubMed:15692563, ECO:0000269|PubMed:15692567}.
Q86YD5 LDLRAD3 S313 ochoa Low-density lipoprotein receptor class A domain-containing protein 3 (LDLR class A domain-containing protein 3) May influence APP processing, resulting in a decrease in sAPP-alpha production and increased amyloidogenic P3 peptide production. May regulate ITCH and NEDD4 E3 ligase activity and degradation (PubMed:26854353). {ECO:0000250, ECO:0000269|PubMed:26854353}.; FUNCTION: (Microbial infection) Acts as a receptor for Venezuelan equine encephalitis virus. {ECO:0000269|PubMed:33208938, ECO:0000269|PubMed:34646020, ECO:0000269|PubMed:34646021}.
Q8N2F6 ARMC10 S54 ochoa Armadillo repeat-containing protein 10 (Splicing variant involved in hepatocarcinogenesis protein) May play a role in cell survival and cell growth. May suppress the transcriptional activity of p53/TP53. {ECO:0000269|PubMed:12839973, ECO:0000269|PubMed:17904127}.
Q8NHM5 KDM2B S483 ochoa Lysine-specific demethylase 2B (EC 1.14.11.27) (CXXC-type zinc finger protein 2) (F-box and leucine-rich repeat protein 10) (F-box protein FBL10) (F-box/LRR-repeat protein 10) (JmjC domain-containing histone demethylation protein 1B) (Jumonji domain-containing EMSY-interactor methyltransferase motif protein) (Protein JEMMA) (Protein-containing CXXC domain 2) ([Histone-H3]-lysine-36 demethylase 1B) Histone demethylase that demethylates 'Lys-4' and 'Lys-36' of histone H3, thereby playing a central role in histone code (PubMed:16362057, PubMed:17994099, PubMed:26237645). Preferentially demethylates trimethylated H3 'Lys-4' and dimethylated H3 'Lys-36' residue while it has weak or no activity for mono- and tri-methylated H3 'Lys-36' (PubMed:16362057, PubMed:17994099, PubMed:26237645). Preferentially binds the transcribed region of ribosomal RNA and represses the transcription of ribosomal RNA genes which inhibits cell growth and proliferation (PubMed:16362057, PubMed:17994099). May also serve as a substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex (Probable). {ECO:0000269|PubMed:16362057, ECO:0000269|PubMed:17994099, ECO:0000269|PubMed:26237645, ECO:0000305}.
Q8WUA7 TBC1D22A S150 ochoa TBC1 domain family member 22A May act as a GTPase-activating protein for Rab family protein(s). {ECO:0000250}.
Q969T4 UBE2E3 S19 ochoa Ubiquitin-conjugating enzyme E2 E3 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme E3) (UbcH9) (Ubiquitin carrier protein E3) (Ubiquitin-conjugating enzyme E2-23 kDa) (Ubiquitin-protein ligase E3) Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'- and 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitination. Participates in the regulation of transepithelial sodium transport in renal cells. {ECO:0000269|PubMed:10343118, ECO:0000269|PubMed:20061386, ECO:0000269|PubMed:27237050}.
Q96HA1 POM121 S294 ochoa Nuclear envelope pore membrane protein POM 121 (Nuclear envelope pore membrane protein POM 121A) (Nucleoporin Nup121) (Pore membrane protein of 121 kDa) Essential component of the nuclear pore complex (NPC). The repeat-containing domain may be involved in anchoring components of the pore complex to the pore membrane. When overexpressed in cells induces the formation of cytoplasmic annulate lamellae (AL). {ECO:0000269|PubMed:17900573}.
Q96JB2 COG3 S525 ochoa Conserved oligomeric Golgi complex subunit 3 (COG complex subunit 3) (Component of oligomeric Golgi complex 3) (Vesicle-docking protein SEC34 homolog) (p94) Involved in ER-Golgi transport (PubMed:11929878). Also involved in retrograde (Golgi to ER) transport (PubMed:37711075). {ECO:0000269|PubMed:11929878, ECO:0000269|PubMed:37711075}.
Q96JK2 DCAF5 S638 ochoa DDB1- and CUL4-associated factor 5 (Breakpoint cluster region protein 2) (BCRP2) (WD repeat-containing protein 22) Is a substrate receptor for the CUL4-DDB1 E3 ubiquitin-protein ligase complex (CRL4) (PubMed:29691401, PubMed:30442713). The complex CRL4-DCAF5 is involved in the ubiquitination of a set of methylated non-histone proteins, including SOX2, DNMT1 and E2F1 (PubMed:29691401, PubMed:30442713). {ECO:0000269|PubMed:16949367, ECO:0000269|PubMed:16964240, ECO:0000269|PubMed:29691401, ECO:0000269|PubMed:30442713}.
Q96MY1 NOL4L S387 ochoa Nucleolar protein 4-like None
Q96PU5 NEDD4L S377 ochoa E3 ubiquitin-protein ligase NEDD4-like (EC 2.3.2.26) (EC 2.3.2.36) (HECT-type E3 ubiquitin transferase NED4L) (NEDD4.2) (Nedd4-2) E3 ubiquitin-protein ligase that mediates the polyubiquitination of lysine and cysteine residues on target proteins and is thereby implicated in the regulation of various signaling pathways including autophagy, innate immunity or DNA repair (PubMed:20064473, PubMed:31959741, PubMed:33608556). Inhibits TGF-beta signaling by triggering SMAD2 and TGFBR1 ubiquitination and proteasome-dependent degradation (PubMed:15496141). Downregulates autophagy and cell growth by ubiquitinating and reducing cellular ULK1 or ASCT2 levels (PubMed:28820317, PubMed:31959741). Promotes ubiquitination and internalization of various plasma membrane channels such as ENaC, SCN2A/Nav1.2, SCN3A/Nav1.3, SCN5A/Nav1.5, SCN9A/Nav1.7, SCN10A/Nav1.8, KCNA3/Kv1.3, KCNH2, EAAT1, KCNQ2/Kv7.2, KCNQ3/Kv7.3 or CLC5 (PubMed:26363003, PubMed:27445338). Promotes ubiquitination and degradation of SGK1 and TNK2. Ubiquitinates BRAT1 and this ubiquitination is enhanced in the presence of NDFIP1 (PubMed:25631046). Plays a role in dendrite formation by melanocytes (PubMed:23999003). Involved in the regulation of TOR signaling (PubMed:27694961). Ubiquitinates and regulates protein levels of NTRK1 once this one is activated by NGF (PubMed:27445338). Plays a role in antiviral innate immunity by catalyzing 'Lys-29'-linked cysteine ubiquitination of TRAF3, resulting in enhanced 'Lys-48' and 'Lys-63'-linked ubiquitination of TRAF3 (PubMed:33608556). Ubiquitinates TTYH2 and TTYH3 and regulates protein levels of TTYH2 (PubMed:18577513). {ECO:0000250|UniProtKB:Q8CFI0, ECO:0000269|PubMed:12911626, ECO:0000269|PubMed:15040001, ECO:0000269|PubMed:15217910, ECO:0000269|PubMed:15489223, ECO:0000269|PubMed:15496141, ECO:0000269|PubMed:15576372, ECO:0000269|PubMed:18577513, ECO:0000269|PubMed:19144635, ECO:0000269|PubMed:23999003, ECO:0000269|PubMed:25631046, ECO:0000269|PubMed:26363003, ECO:0000269|PubMed:27445338, ECO:0000269|PubMed:27694961, ECO:0000269|PubMed:33608556}.
Q96T58 SPEN S2359 ochoa Msx2-interacting protein (SMART/HDAC1-associated repressor protein) (SPEN homolog) May serve as a nuclear matrix platform that organizes and integrates transcriptional responses. In osteoblasts, supports transcription activation: synergizes with RUNX2 to enhance FGFR2-mediated activation of the osteocalcin FGF-responsive element (OCFRE) (By similarity). Has also been shown to be an essential corepressor protein, which probably regulates different key pathways such as the Notch pathway. Negative regulator of the Notch pathway via its interaction with RBPSUH, which prevents the association between NOTCH1 and RBPSUH, and therefore suppresses the transactivation activity of Notch signaling. Blocks the differentiation of precursor B-cells into marginal zone B-cells. Probably represses transcription via the recruitment of large complexes containing histone deacetylase proteins. May bind both to DNA and RNA. {ECO:0000250|UniProtKB:Q62504, ECO:0000269|PubMed:11331609, ECO:0000269|PubMed:12374742}.
Q99460 PSMD1 S305 ochoa 26S proteasome non-ATPase regulatory subunit 1 (26S proteasome regulatory subunit RPN2) (26S proteasome regulatory subunit S1) (26S proteasome subunit p112) Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair. {ECO:0000269|PubMed:1317798}.
Q99570 PIK3R4 S865 ochoa Phosphoinositide 3-kinase regulatory subunit 4 (PI3-kinase regulatory subunit 4) (EC 2.7.11.1) (PI3-kinase p150 subunit) (Phosphoinositide 3-kinase adaptor protein) Regulatory subunit of the PI3K complex that mediates formation of phosphatidylinositol 3-phosphate; different complex forms are believed to play a role in multiple membrane trafficking pathways: PI3KC3-C1 is involved in initiation of autophagosomes and PI3KC3-C2 in maturation of autophagosomes and endocytosis. Involved in regulation of degradative endocytic trafficking and cytokinesis, probably in the context of PI3KC3-C2 (PubMed:20643123). {ECO:0000269|PubMed:20643123}.
Q9BQ67 GRWD1 S21 ochoa Glutamate-rich WD repeat-containing protein 1 Histone binding-protein that regulates chromatin dynamics and minichromosome maintenance (MCM) loading at replication origins, possibly by promoting chromatin openness (PubMed:25990725). {ECO:0000269|PubMed:25990725}.
Q9BSJ6 PIMREG S140 ochoa Protein PIMREG (CALM-interactor expressed in thymus and spleen) (PICALM-interacting mitotic regulator) (Regulator of chromosome segregation protein 1) During mitosis, may play a role in the control of metaphase-to-anaphase transition. {ECO:0000269|PubMed:18757745}.
Q9BXF6 RAB11FIP5 S307 ochoa Rab11 family-interacting protein 5 (Rab11-FIP5) (Gamma-SNAP-associated factor 1) (Gaf-1) (Phosphoprotein pp75) (Rab11-interacting protein Rip11) Rab effector involved in protein trafficking from apical recycling endosomes to the apical plasma membrane. Involved in insulin granule exocytosis. May regulate V-ATPase intracellular transport in response to extracellular acidosis. {ECO:0000269|PubMed:11163216, ECO:0000269|PubMed:20717956}.
Q9BY89 KIAA1671 S1608 ochoa Uncharacterized protein KIAA1671 None
Q9BYB0 SHANK3 S902 ochoa SH3 and multiple ankyrin repeat domains protein 3 (Shank3) (Proline-rich synapse-associated protein 2) (ProSAP2) Major scaffold postsynaptic density protein which interacts with multiple proteins and complexes to orchestrate the dendritic spine and synapse formation, maturation and maintenance. Interconnects receptors of the postsynaptic membrane including NMDA-type and metabotropic glutamate receptors via complexes with GKAP/PSD-95 and HOMER, respectively, and the actin-based cytoskeleton. Plays a role in the structural and functional organization of the dendritic spine and synaptic junction through the interaction with Arp2/3 and WAVE1 complex as well as the promotion of the F-actin clusters. By way of this control of actin dynamics, participates in the regulation of developing neurons growth cone motility and the NMDA receptor-signaling. Also modulates GRIA1 exocytosis and GRM5/MGLUR5 expression and signaling to control the AMPA and metabotropic glutamate receptor-mediated synaptic transmission and plasticity. May be required at an early stage of synapse formation and be inhibited by IGF1 to promote synapse maturation. {ECO:0000269|PubMed:24132240}.
Q9C0B5 ZDHHC5 S305 ochoa Palmitoyltransferase ZDHHC5 (EC 2.3.1.225) (Zinc finger DHHC domain-containing protein 5) (DHHC-5) (Zinc finger protein 375) Palmitoyltransferase that catalyzes the addition of palmitate onto various protein substrates such as CTNND2, CD36, GSDMD, NLRP3, NOD1, NOD2, STAT3 and S1PR1 thus plays a role in various biological processes including cell adhesion, inflammation, fatty acid uptake, bacterial sensing or cardiac functions (PubMed:21820437, PubMed:29185452, PubMed:31402609, PubMed:31649195, PubMed:34293401, PubMed:38092000, PubMed:38530158, PubMed:38599239). Plays an important role in the regulation of synapse efficacy by mediating palmitoylation of delta-catenin/CTNND2, thereby increasing synaptic delivery and surface stabilization of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid receptors (AMPARs) (PubMed:26334723). Under basal conditions, remains at the synaptic membrane through FYN-mediated phosphorylation that prevents association with endocytic proteins (PubMed:26334723). Neuronal activity enhances the internalization and trafficking of DHHC5 from spines to dendritic shafts where it palmitoylates delta-catenin/CTNND2 (PubMed:26334723). Regulates cell adhesion at the plasma membrane by palmitoylating GOLGA7B and DSG2 (PubMed:31402609). Plays a role in innate immune response by mediating the palmitoylation of NOD1 and NOD2 and their proper recruitment to the bacterial entry site and phagosomes (PubMed:31649195, PubMed:34293401). Also participates in fatty acid uptake by palmitoylating CD36 and thereby targeting it to the plasma membrane (PubMed:32958780). Upon binding of fatty acids to CD36, gets phosphorylated by LYN leading to inactivation and subsequent CD36 caveolar endocytosis (PubMed:32958780). Controls oligodendrocyte development by catalyzing STAT3 palmitoylation (By similarity). Acts as a regulator of inflammatory response by mediating palmitoylation of NLRP3 and GSDMD (PubMed:38092000, PubMed:38530158, PubMed:38599239). Palmitoylates NLRP3 to promote inflammasome assembly and activation (PubMed:38092000). Activates pyroptosis by catalyzing palmitoylation of gasdermin-D (GSDMD), thereby promoting membrane translocation and pore formation of GSDMD (PubMed:38530158, PubMed:38599239). {ECO:0000250|UniProtKB:Q8VDZ4, ECO:0000269|PubMed:21820437, ECO:0000269|PubMed:26334723, ECO:0000269|PubMed:29185452, ECO:0000269|PubMed:31402609, ECO:0000269|PubMed:31649195, ECO:0000269|PubMed:32958780, ECO:0000269|PubMed:34293401, ECO:0000269|PubMed:38092000, ECO:0000269|PubMed:38530158, ECO:0000269|PubMed:38599239}.
Q9C0B5 ZDHHC5 S307 ochoa Palmitoyltransferase ZDHHC5 (EC 2.3.1.225) (Zinc finger DHHC domain-containing protein 5) (DHHC-5) (Zinc finger protein 375) Palmitoyltransferase that catalyzes the addition of palmitate onto various protein substrates such as CTNND2, CD36, GSDMD, NLRP3, NOD1, NOD2, STAT3 and S1PR1 thus plays a role in various biological processes including cell adhesion, inflammation, fatty acid uptake, bacterial sensing or cardiac functions (PubMed:21820437, PubMed:29185452, PubMed:31402609, PubMed:31649195, PubMed:34293401, PubMed:38092000, PubMed:38530158, PubMed:38599239). Plays an important role in the regulation of synapse efficacy by mediating palmitoylation of delta-catenin/CTNND2, thereby increasing synaptic delivery and surface stabilization of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid receptors (AMPARs) (PubMed:26334723). Under basal conditions, remains at the synaptic membrane through FYN-mediated phosphorylation that prevents association with endocytic proteins (PubMed:26334723). Neuronal activity enhances the internalization and trafficking of DHHC5 from spines to dendritic shafts where it palmitoylates delta-catenin/CTNND2 (PubMed:26334723). Regulates cell adhesion at the plasma membrane by palmitoylating GOLGA7B and DSG2 (PubMed:31402609). Plays a role in innate immune response by mediating the palmitoylation of NOD1 and NOD2 and their proper recruitment to the bacterial entry site and phagosomes (PubMed:31649195, PubMed:34293401). Also participates in fatty acid uptake by palmitoylating CD36 and thereby targeting it to the plasma membrane (PubMed:32958780). Upon binding of fatty acids to CD36, gets phosphorylated by LYN leading to inactivation and subsequent CD36 caveolar endocytosis (PubMed:32958780). Controls oligodendrocyte development by catalyzing STAT3 palmitoylation (By similarity). Acts as a regulator of inflammatory response by mediating palmitoylation of NLRP3 and GSDMD (PubMed:38092000, PubMed:38530158, PubMed:38599239). Palmitoylates NLRP3 to promote inflammasome assembly and activation (PubMed:38092000). Activates pyroptosis by catalyzing palmitoylation of gasdermin-D (GSDMD), thereby promoting membrane translocation and pore formation of GSDMD (PubMed:38530158, PubMed:38599239). {ECO:0000250|UniProtKB:Q8VDZ4, ECO:0000269|PubMed:21820437, ECO:0000269|PubMed:26334723, ECO:0000269|PubMed:29185452, ECO:0000269|PubMed:31402609, ECO:0000269|PubMed:31649195, ECO:0000269|PubMed:32958780, ECO:0000269|PubMed:34293401, ECO:0000269|PubMed:38092000, ECO:0000269|PubMed:38530158, ECO:0000269|PubMed:38599239}.
Q9GZU1 MCOLN1 Y22 ochoa Mucolipin-1 (ML1) (MG-2) (Mucolipidin) (Transient receptor potential channel mucolipin 1) (TRPML1) Nonselective cation channel probably playing a role in the regulation of membrane trafficking events and of metal homeostasis (PubMed:11013137, PubMed:12459486, PubMed:14749347, PubMed:15336987, PubMed:18794901, PubMed:25720963, PubMed:27623384, PubMed:29019983). Acts as a Ca(2+)-permeable cation channel with inwardly rectifying activity (PubMed:25720963, PubMed:29019983). Proposed to play a major role in Ca(2+) release from late endosome and lysosome vesicles to the cytoplasm, which is important for many lysosome-dependent cellular events, including the fusion and trafficking of these organelles, exocytosis and autophagy (PubMed:11013137, PubMed:12459486, PubMed:14749347, PubMed:15336987, PubMed:25720963, PubMed:27623384, PubMed:29019983). Required for efficient uptake of large particles in macrophages in which Ca(2+) release from the lysosomes triggers lysosomal exocytosis. May also play a role in phagosome-lysosome fusion (By similarity). Involved in lactosylceramide trafficking indicative for a role in the regulation of late endocytic membrane fusion/fission events (PubMed:16978393). By mediating lysosomal Ca(2+) release is involved in regulation of mTORC1 signaling and in mTOR/TFEB-dependent lysosomal adaptation to environmental cues such as nutrient levels (PubMed:25720963, PubMed:25733853, PubMed:27787197). Seems to act as lysosomal active oxygen species (ROS) sensor involved in ROS-induced TFEB activation and autophagy (PubMed:27357649). Also functions as a Fe(2+) permeable channel in late endosomes and lysosomes (PubMed:18794901). Also permeable to Mg(2+), Na(+). K(+) and Cs(+) (By similarity). Proposed to play a role in zinc homeostasis probably implicating its association with TMEM163 (PubMed:25130899) In adaptive immunity, TRPML2 and TRPML1 may play redundant roles in the function of the specialized lysosomes of B cells (By similarity). {ECO:0000250|UniProtKB:Q99J21, ECO:0000269|PubMed:12459486, ECO:0000269|PubMed:14749347, ECO:0000269|PubMed:15336987, ECO:0000269|PubMed:16978393, ECO:0000269|PubMed:18794901, ECO:0000269|PubMed:25130899, ECO:0000269|PubMed:25720963, ECO:0000269|PubMed:25733853, ECO:0000269|PubMed:27357649, ECO:0000269|PubMed:27623384, ECO:0000269|PubMed:27787197, ECO:0000269|PubMed:29019983, ECO:0000305|PubMed:11013137}.; FUNCTION: May contribute to cellular lipase activity within the late endosomal pathway or at the cell surface which may be involved in processes of membrane reshaping and vesiculation, especially the growth of tubular structures. However, it is not known, whether it conveys the enzymatic activity directly, or merely facilitates the activity of an associated phospholipase. {ECO:0000305|PubMed:21256127}.
Q9GZY6 LAT2 S55 ochoa Linker for activation of T-cells family member 2 (Linker for activation of B-cells) (Membrane-associated adapter molecule) (Non-T-cell activation linker) (Williams-Beuren syndrome chromosomal region 15 protein) (Williams-Beuren syndrome chromosomal region 5 protein) Involved in FCER1 (high affinity immunoglobulin epsilon receptor)-mediated signaling in mast cells. May also be involved in BCR (B-cell antigen receptor)-mediated signaling in B-cells and FCGR1 (high affinity immunoglobulin gamma Fc receptor I)-mediated signaling in myeloid cells. Couples activation of these receptors and their associated kinases with distal intracellular events through the recruitment of GRB2. {ECO:0000269|PubMed:12486104, ECO:0000269|PubMed:12514734, ECO:0000269|PubMed:15010370}.
Q9H4E7 DEF6 S606 ochoa Differentially expressed in FDCP 6 homolog (DEF-6) (IRF4-binding protein) Phosphatidylinositol 3,4,5-trisphosphate-dependent guanine nucleotide exchange factor (GEF) which plays a role in the activation of Rho GTPases RAC1, RhoA and CDC42 (PubMed:12651066, PubMed:15023524). Can regulate cell morphology in cooperation with activated RAC1 (By similarity). Involved in immune homeostasis by ensuring proper trafficking and availability of T-cell regulator CTLA-4 at T-cell surface (PubMed:31308374). Plays a role in Th2 (T helper cells) development and/or activation, perhaps by interfering with ZAP70 signaling (By similarity). {ECO:0000250|UniProtKB:Q8C2K1, ECO:0000269|PubMed:12651066, ECO:0000269|PubMed:15023524, ECO:0000269|PubMed:31308374}.
Q9H7N4 SCAF1 S535 ochoa Splicing factor, arginine/serine-rich 19 (SR-related C-terminal domain-associated factor 1) (SR-related and CTD-associated factor 1) (SR-related-CTD-associated factor) (SCAF) (Serine arginine-rich pre-mRNA splicing factor SR-A1) (SR-A1) May function in pre-mRNA splicing. {ECO:0000250}.
Q9H7N4 SCAF1 S975 ochoa Splicing factor, arginine/serine-rich 19 (SR-related C-terminal domain-associated factor 1) (SR-related and CTD-associated factor 1) (SR-related-CTD-associated factor) (SCAF) (Serine arginine-rich pre-mRNA splicing factor SR-A1) (SR-A1) May function in pre-mRNA splicing. {ECO:0000250}.
Q9NQS7 INCENP S411 ochoa Inner centromere protein Component of the chromosomal passenger complex (CPC), a complex that acts as a key regulator of mitosis. The CPC complex has essential functions at the centromere in ensuring correct chromosome alignment and segregation and is required for chromatin-induced microtubule stabilization and spindle assembly. Acts as a scaffold regulating CPC localization and activity. The C-terminus associates with AURKB or AURKC, the N-terminus associated with BIRC5/survivin and CDCA8/borealin tethers the CPC to the inner centromere, and the microtubule binding activity within the central SAH domain directs AURKB/C toward substrates near microtubules (PubMed:12925766, PubMed:15316025, PubMed:27332895). The flexibility of the SAH domain is proposed to allow AURKB/C to follow substrates on dynamic microtubules while ensuring CPC docking to static chromatin (By similarity). Activates AURKB and AURKC (PubMed:27332895). Required for localization of CBX5 to mitotic centromeres (PubMed:21346195). Controls the kinetochore localization of BUB1 (PubMed:16760428). {ECO:0000250|UniProtKB:P53352, ECO:0000269|PubMed:12925766, ECO:0000269|PubMed:15316025, ECO:0000269|PubMed:16760428, ECO:0000269|PubMed:21346195, ECO:0000269|PubMed:27332895}.
Q9NZM3 ITSN2 S230 ochoa Intersectin-2 (SH3 domain-containing protein 1B) (SH3P18) (SH3P18-like WASP-associated protein) Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles (CCPs). Seems to be involved in CCPs maturation including invagination or budding. Involved in endocytosis of integrin beta-1 (ITGB1) and transferrin receptor (TFR). Plays a role in dendrite formation by melanocytes (PubMed:23999003). {ECO:0000269|PubMed:19458185, ECO:0000269|PubMed:22648170, ECO:0000269|PubMed:23999003}.
Q9P1Y6 PHRF1 T961 ochoa PHD and RING finger domain-containing protein 1 None
Q9UHR4 BAIAP2L1 S251 ochoa BAR/IMD domain-containing adapter protein 2-like 1 (Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1) (BAI1-associated protein 2-like protein 1) (Insulin receptor tyrosine kinase substrate) May function as adapter protein. Involved in the formation of clusters of actin bundles. Plays a role in the reorganization of the actin cytoskeleton in response to bacterial infection. {ECO:0000269|PubMed:17430976, ECO:0000269|PubMed:19366662, ECO:0000269|PubMed:22921828}.
Q9UID3 VPS51 S652 ochoa Vacuolar protein sorting-associated protein 51 homolog (Another new gene 2 protein) (Protein fat-free homolog) Acts as a component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex is required for the maintenance of protein retrieval from endosomes to the TGN, acid hydrolase sorting, lysosome function, endosomal cholesterol traffic and autophagy. VPS51 participates in retrograde transport of acid hydrolase receptors, likely by promoting tethering and SNARE-dependent fusion of endosome-derived carriers to the TGN (PubMed:20685960). Acts as a component of the EARP complex that is involved in endocytic recycling. The EARP complex associates with Rab4-positive endosomes and promotes recycling of internalized transferrin receptor (TFRC) to the plasma membrane (PubMed:25799061). {ECO:0000269|PubMed:20685960, ECO:0000269|PubMed:25799061}.
Q9UKV3 ACIN1 S675 ochoa Apoptotic chromatin condensation inducer in the nucleus (Acinus) Auxiliary component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Component of the ASAP complexes which bind RNA in a sequence-independent manner and are proposed to be recruited to the EJC prior to or during the splicing process and to regulate specific excision of introns in specific transcription subsets; ACIN1 confers RNA-binding to the complex. The ASAP complex can inhibit RNA processing during in vitro splicing reactions. The ASAP complex promotes apoptosis and is disassembled after induction of apoptosis. Involved in the splicing modulation of BCL2L1/Bcl-X (and probably other apoptotic genes); specifically inhibits formation of proapoptotic isoforms such as Bcl-X(S); the activity is different from the established EJC assembly and function. Induces apoptotic chromatin condensation after activation by CASP3. Regulates cyclin A1, but not cyclin A2, expression in leukemia cells. {ECO:0000269|PubMed:10490026, ECO:0000269|PubMed:12665594, ECO:0000269|PubMed:18559500, ECO:0000269|PubMed:22203037, ECO:0000269|PubMed:22388736}.
Q9UKV3 ACIN1 S676 ochoa Apoptotic chromatin condensation inducer in the nucleus (Acinus) Auxiliary component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Component of the ASAP complexes which bind RNA in a sequence-independent manner and are proposed to be recruited to the EJC prior to or during the splicing process and to regulate specific excision of introns in specific transcription subsets; ACIN1 confers RNA-binding to the complex. The ASAP complex can inhibit RNA processing during in vitro splicing reactions. The ASAP complex promotes apoptosis and is disassembled after induction of apoptosis. Involved in the splicing modulation of BCL2L1/Bcl-X (and probably other apoptotic genes); specifically inhibits formation of proapoptotic isoforms such as Bcl-X(S); the activity is different from the established EJC assembly and function. Induces apoptotic chromatin condensation after activation by CASP3. Regulates cyclin A1, but not cyclin A2, expression in leukemia cells. {ECO:0000269|PubMed:10490026, ECO:0000269|PubMed:12665594, ECO:0000269|PubMed:18559500, ECO:0000269|PubMed:22203037, ECO:0000269|PubMed:22388736}.
Q9ULT8 HECTD1 S1729 ochoa E3 ubiquitin-protein ligase HECTD1 (EC 2.3.2.26) (E3 ligase for inhibin receptor) (EULIR) (HECT domain-containing protein 1) E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates (PubMed:33711283). Mediates 'Lys-63'-linked polyubiquitination of HSP90AA1 which leads to its intracellular localization and reduced secretion (By similarity). Negatively regulating HSP90AA1 secretion in cranial mesenchyme cells may impair their emigration and may be essential for the correct development of the cranial neural folds and neural tube closure (By similarity). Catalyzes ubiquitination and degradation of ZNF622, an assembly factor for the ribosomal 60S subunit, in hematopoietic cells, thereby promoting hematopoietic stem cell renewal (PubMed:33711283). {ECO:0000250|UniProtKB:Q69ZR2, ECO:0000269|PubMed:33711283}.
Q9UMN6 KMT2B S848 ochoa Histone-lysine N-methyltransferase 2B (Lysine N-methyltransferase 2B) (EC 2.1.1.364) (Myeloid/lymphoid or mixed-lineage leukemia protein 4) (Trithorax homolog 2) (WW domain-binding protein 7) (WBP-7) Histone methyltransferase that catalyzes methyl group transfer from S-adenosyl-L-methionine to the epsilon-amino group of 'Lys-4' of histone H3 (H3K4) via a non-processive mechanism. Part of chromatin remodeling machinery predominantly forms H3K4me1 and H3K4me2 methylation marks at active chromatin sites where transcription and DNA repair take place (PubMed:17707229, PubMed:25561738). Likely plays a redundant role with KMT2C in enriching H3K4me1 marks on primed and active enhancer elements (PubMed:24081332). Plays a central role in beta-globin locus transcription regulation by being recruited by NFE2 (PubMed:17707229). Plays an important role in controlling bulk H3K4me during oocyte growth and preimplantation development (By similarity). Required during the transcriptionally active period of oocyte growth for the establishment and/or maintenance of bulk H3K4 trimethylation (H3K4me3), global transcriptional silencing that preceeds resumption of meiosis, oocyte survival and normal zygotic genome activation (By similarity). {ECO:0000250|UniProtKB:O08550, ECO:0000269|PubMed:17707229, ECO:0000269|PubMed:24081332, ECO:0000269|PubMed:25561738}.
Q9Y2H0 DLGAP4 S620 ochoa Disks large-associated protein 4 (DAP-4) (PSD-95/SAP90-binding protein 4) (SAP90/PSD-95-associated protein 4) (SAPAP-4) May play a role in the molecular organization of synapses and neuronal cell signaling. Could be an adapter protein linking ion channel to the subsynaptic cytoskeleton. May induce enrichment of PSD-95/SAP90 at the plasma membrane.
Q9Y3C5 RNF11 S25 ochoa RING finger protein 11 Essential component of a ubiquitin-editing protein complex, comprising also TNFAIP3, ITCH and TAX1BP1, that ensures the transient nature of inflammatory signaling pathways. Promotes the association of TNFAIP3 to RIPK1 after TNF stimulation. TNFAIP3 deubiquitinates 'Lys-63' polyubiquitin chains on RIPK1 and catalyzes the formation of 'Lys-48'-polyubiquitin chains. This leads to RIPK1 proteasomal degradation and consequently termination of the TNF- or LPS-mediated activation of NF-kappa-B. Recruits STAMBP to the E3 ubiquitin-ligase SMURF2 for ubiquitination, leading to its degradation by the 26S proteasome. {ECO:0000269|PubMed:14755250}.
Q9Y520 PRRC2C S1274 ochoa Protein PRRC2C (BAT2 domain-containing protein 1) (HBV X-transactivated gene 2 protein) (HBV XAg-transactivated protein 2) (HLA-B-associated transcript 2-like 2) (Proline-rich and coiled-coil-containing protein 2C) Required for efficient formation of stress granules. {ECO:0000269|PubMed:29395067}.
Q9Y6R1 SLC4A4 S79 ochoa Electrogenic sodium bicarbonate cotransporter 1 (Sodium bicarbonate cotransporter) (Na(+)/HCO3(-) cotransporter) (Solute carrier family 4 member 4) (kNBC1) Electrogenic sodium/bicarbonate cotransporter with a Na(+):HCO3(-) stoichiometry varying from 1:2 to 1:3. May regulate bicarbonate influx/efflux at the basolateral membrane of cells and regulate intracellular pH. {ECO:0000269|PubMed:10069984, ECO:0000269|PubMed:11744745, ECO:0000269|PubMed:12411514, ECO:0000269|PubMed:12730338, ECO:0000269|PubMed:12907161, ECO:0000269|PubMed:14567693, ECO:0000269|PubMed:15218065, ECO:0000269|PubMed:15713912, ECO:0000269|PubMed:15817634, ECO:0000269|PubMed:15930088, ECO:0000269|PubMed:16636648, ECO:0000269|PubMed:16769890, ECO:0000269|PubMed:17661077, ECO:0000269|PubMed:23324180, ECO:0000269|PubMed:23636456, ECO:0000269|PubMed:29500354, ECO:0000269|PubMed:9235899, ECO:0000269|PubMed:9651366}.
Q92733 PRCC S278 Sugiyama Proline-rich protein PRCC (Papillary renal cell carcinoma translocation-associated gene protein) May regulate cell cycle progression through interaction with MAD2L2. {ECO:0000269|PubMed:11717438}.
Q04637 EIF4G1 S198 Sugiyama Eukaryotic translation initiation factor 4 gamma 1 (eIF-4-gamma 1) (eIF-4G 1) (eIF-4G1) (p220) Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome (PubMed:29987188). Exists in two complexes, either with EIF1 or with EIF4E (mutually exclusive) (PubMed:29987188). Together with EIF1, is required for leaky scanning, in particular for avoiding cap-proximal start codon (PubMed:29987188). Together with EIF4E, antagonizes the scanning promoted by EIF1-EIF4G1 and locates the start codon (through a TISU element) without scanning (PubMed:29987188). As a member of the eIF4F complex, required for endoplasmic reticulum stress-induced ATF4 mRNA translation (PubMed:29062139). {ECO:0000269|PubMed:29062139, ECO:0000269|PubMed:29987188}.
Q16222 UAP1 S496 Sugiyama UDP-N-acetylhexosamine pyrophosphorylase (Antigen X) (AGX) (Protein-pyrophosphorylation enzyme) (EC 2.7.4.-) (Sperm-associated antigen 2) (UDP-N-acetylgalactosamine pyrophosphorylase) (EC 2.7.7.83) (UDP-N-acetylglucosamine pyrophosphorylase) (EC 2.7.7.23) Catalyzes the last step in biosynthesis of uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc) by converting UTP and glucosamine 1-phosphate (GlcNAc-1-P) to the sugar nucleotide (PubMed:9603950, PubMed:9765219). Also converts UTP and galactosamine 1-phosphate (GalNAc-1-P) into uridine diphosphate-N-acetylgalactosamine (UDP-GalNAc) (PubMed:9765219). In addition to its role in metabolism, acts as a regulator of innate immunity in response to virus infection by mediating pyrophosphorylation of IRF3: catalyzes pyrophosphorylation of IRF3 phosphorylated at 'Ser-386' by TBK1, promoting IRF3 dimerization and activation, leading to type I interferon responses (PubMed:36603579). {ECO:0000269|PubMed:36603579, ECO:0000269|PubMed:9603950, ECO:0000269|PubMed:9765219}.; FUNCTION: [Isoform AGX1]: Isoform AGX1 has 2 to 3 times higher activity towards galactosamine 1-phosphate (GalNAc-1-P). {ECO:0000269|PubMed:9765219}.; FUNCTION: [Isoform AGX1]: Isoform AGX2 has 8 times more activity towards glucosamine 1-phosphate (GlcNAc-1-P). {ECO:0000269|PubMed:9765219}.
Q07157 TJP1 S1153 Sugiyama Tight junction protein 1 (Tight junction protein ZO-1) (Zona occludens protein 1) (Zonula occludens protein 1) TJP1, TJP2, and TJP3 are closely related scaffolding proteins that link tight junction (TJ) transmembrane proteins such as claudins, junctional adhesion molecules, and occludin to the actin cytoskeleton (PubMed:7798316, PubMed:9792688). Forms a multistranded TJP1/ZO1 condensate which elongates to form a tight junction belt, the belt is anchored at the apical cell membrane via interaction with PATJ (By similarity). The tight junction acts to limit movement of substances through the paracellular space and as a boundary between the compositionally distinct apical and basolateral plasma membrane domains of epithelial and endothelial cells. Necessary for lumenogenesis, and particularly efficient epithelial polarization and barrier formation (By similarity). Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells (PubMed:21240187). Plays an important role in podosome formation and associated function, thus regulating cell adhesion and matrix remodeling (PubMed:20930113). With TJP2 and TJP3, participates in the junctional retention and stability of the transcription factor DBPA, but is not involved in its shuttling to the nucleus (By similarity). May play a role in mediating cell morphology changes during ameloblast differentiation via its role in tight junctions (By similarity). {ECO:0000250|UniProtKB:O97758, ECO:0000250|UniProtKB:P39447, ECO:0000269|PubMed:20930113, ECO:0000269|PubMed:21240187}.
Q8TD08 MAPK15 S364 Sugiyama Mitogen-activated protein kinase 15 (MAP kinase 15) (MAPK 15) (EC 2.7.11.24) (Extracellular signal-regulated kinase 7) (ERK-7) (Extracellular signal-regulated kinase 8) (ERK-8) Atypical MAPK protein that regulates several process such as autophagy, ciliogenesis, protein trafficking/secretion and genome integrity, in a kinase activity-dependent manner (PubMed:20733054, PubMed:21847093, PubMed:22948227, PubMed:24618899, PubMed:29021280). Controls both, basal and starvation-induced autophagy throught its interaction with GABARAP, MAP1LC3B and GABARAPL1 leading to autophagosome formation, SQSTM1 degradation and reduced MAP1LC3B inhibitory phosphorylation (PubMed:22948227). Regulates primary cilium formation and the localization of ciliary proteins involved in cilium structure, transport, and signaling (PubMed:29021280). Prevents the relocation of the sugar-adding enzymes from the Golgi to the endoplasmic reticulum, thereby restricting the production of sugar-coated proteins (PubMed:24618899). Upon amino-acid starvation, mediates transitional endoplasmic reticulum site disassembly and inhibition of secretion (PubMed:21847093). Binds to chromatin leading to MAPK15 activation and interaction with PCNA, that which protects genomic integrity by inhibiting MDM2-mediated degradation of PCNA (PubMed:20733054). Regulates DA transporter (DAT) activity and protein expression via activation of RhoA (PubMed:28842414). In response to H(2)O(2) treatment phosphorylates ELAVL1, thus preventing it from binding to the PDCD4 3'UTR and rendering the PDCD4 mRNA accessible to miR-21 and leading to its degradation and loss of protein expression (PubMed:26595526). Also functions in a kinase activity-independent manner as a negative regulator of growth (By similarity). Phosphorylates in vitro FOS and MBP (PubMed:11875070, PubMed:16484222, PubMed:19166846, PubMed:20638370). During oocyte maturation, plays a key role in the microtubule organization and meiotic cell cycle progression in oocytes, fertilized eggs, and early embryos (By similarity). Interacts with ESRRA promoting its re-localization from the nucleus to the cytoplasm and then prevents its transcriptional activity (PubMed:21190936). {ECO:0000250|UniProtKB:Q80Y86, ECO:0000250|UniProtKB:Q9Z2A6, ECO:0000269|PubMed:11875070, ECO:0000269|PubMed:16484222, ECO:0000269|PubMed:19166846, ECO:0000269|PubMed:20638370, ECO:0000269|PubMed:20733054, ECO:0000269|PubMed:21190936, ECO:0000269|PubMed:21847093, ECO:0000269|PubMed:22948227, ECO:0000269|PubMed:24618899, ECO:0000269|PubMed:26595526, ECO:0000269|PubMed:28842414, ECO:0000269|PubMed:29021280}.
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reactome_id name p -log10_p
R-HSA-5619107 Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC... 1.482576e-07 6.829
R-HSA-1855196 IP3 and IP4 transport between cytosol and nucleus 1.738499e-07 6.760
R-HSA-1855229 IP6 and IP7 transport between cytosol and nucleus 1.738499e-07 6.760
R-HSA-1855170 IPs transport between nucleus and cytosol 2.359808e-07 6.627
R-HSA-159227 Transport of the SLBP independent Mature mRNA 2.359808e-07 6.627
R-HSA-159230 Transport of the SLBP Dependant Mature mRNA 2.732823e-07 6.563
R-HSA-170822 Regulation of Glucokinase by Glucokinase Regulatory Protein 2.732823e-07 6.563
R-HSA-1169408 ISG15 antiviral mechanism 7.666121e-08 7.115
R-HSA-1169410 Antiviral mechanism by IFN-stimulated genes 1.846774e-07 6.734
R-HSA-180746 Nuclear import of Rev protein 3.152953e-07 6.501
R-HSA-3301854 Nuclear Pore Complex (NPC) Disassembly 3.624707e-07 6.441
R-HSA-159231 Transport of Mature mRNA Derived from an Intronless Transcript 6.128821e-07 6.213
R-HSA-159234 Transport of Mature mRNAs Derived from Intronless Transcripts 6.937142e-07 6.159
R-HSA-180910 Vpr-mediated nuclear import of PICs 4.742631e-07 6.324
R-HSA-177243 Interactions of Rev with host cellular proteins 6.937142e-07 6.159
R-HSA-176033 Interactions of Vpr with host cellular proteins 6.937142e-07 6.159
R-HSA-165054 Rev-mediated nuclear export of HIV RNA 5.399352e-07 6.268
R-HSA-168276 NS1 Mediated Effects on Host Pathways 6.128821e-07 6.213
R-HSA-168271 Transport of Ribonucleoproteins into the Host Nucleus 7.830771e-07 6.106
R-HSA-159236 Transport of Mature mRNA derived from an Intron-Containing Transcript 1.058597e-06 5.975
R-HSA-168333 NEP/NS2 Interacts with the Cellular Export Machinery 1.383033e-06 5.859
R-HSA-168274 Export of Viral Ribonucleoproteins from Nucleus 1.539233e-06 5.813
R-HSA-72202 Transport of Mature Transcript to Cytoplasm 2.112025e-06 5.675
R-HSA-72203 Processing of Capped Intron-Containing Pre-mRNA 3.753353e-06 5.426
R-HSA-2980766 Nuclear Envelope Breakdown 4.424254e-06 5.354
R-HSA-191859 snRNP Assembly 5.252198e-06 5.280
R-HSA-194441 Metabolism of non-coding RNA 5.252198e-06 5.280
R-HSA-168325 Viral Messenger RNA Synthesis 6.201828e-06 5.207
R-HSA-6784531 tRNA processing in the nucleus 6.726359e-06 5.172
R-HSA-9705671 SARS-CoV-2 activates/modulates innate and adaptive immune responses 9.768990e-06 5.010
R-HSA-5578749 Transcriptional regulation by small RNAs 1.423660e-05 4.847
R-HSA-68875 Mitotic Prophase 2.725364e-05 4.565
R-HSA-162909 Host Interactions of HIV factors 3.279630e-05 4.484
R-HSA-9705683 SARS-CoV-2-host interactions 3.324795e-05 4.478
R-HSA-68886 M Phase 5.789547e-05 4.237
R-HSA-913531 Interferon Signaling 5.918304e-05 4.228
R-HSA-162599 Late Phase of HIV Life Cycle 8.240063e-05 4.084
R-HSA-70171 Glycolysis 8.663380e-05 4.062
R-HSA-3371453 Regulation of HSF1-mediated heat shock response 9.544781e-05 4.020
R-HSA-8953854 Metabolism of RNA 1.095039e-04 3.961
R-HSA-211000 Gene Silencing by RNA 1.262462e-04 3.899
R-HSA-9694516 SARS-CoV-2 Infection 1.353194e-04 3.869
R-HSA-162587 HIV Life Cycle 1.427511e-04 3.845
R-HSA-1483249 Inositol phosphate metabolism 1.575210e-04 3.803
R-HSA-5619102 SLC transporter disorders 1.999908e-04 3.699
R-HSA-162906 HIV Infection 1.999992e-04 3.699
R-HSA-70326 Glucose metabolism 2.112825e-04 3.675
R-HSA-3371556 Cellular response to heat stress 2.479380e-04 3.606
R-HSA-5619115 Disorders of transmembrane transporters 3.359091e-04 3.474
R-HSA-69278 Cell Cycle, Mitotic 3.865119e-04 3.413
R-HSA-1640170 Cell Cycle 7.883026e-04 3.103
R-HSA-429914 Deadenylation-dependent mRNA decay 9.547074e-04 3.020
R-HSA-168273 Influenza Viral RNA Transcription and Replication 9.041595e-04 3.044
R-HSA-9610379 HCMV Late Events 9.588770e-04 3.018
R-HSA-3134963 DEx/H-box helicases activate type I IFN and inflammatory cytokines production 9.640496e-04 3.016
R-HSA-429947 Deadenylation of mRNA 9.949698e-04 3.002
R-HSA-8935964 RUNX1 regulates expression of components of tight junctions 1.253932e-03 2.902
R-HSA-72306 tRNA processing 1.416734e-03 2.849
R-HSA-168255 Influenza Infection 1.788907e-03 2.747
R-HSA-111465 Apoptotic cleavage of cellular proteins 1.948777e-03 2.710
R-HSA-69620 Cell Cycle Checkpoints 2.139760e-03 2.670
R-HSA-6796648 TP53 Regulates Transcription of DNA Repair Genes 2.363136e-03 2.627
R-HSA-9609690 HCMV Early Events 2.689304e-03 2.570
R-HSA-141424 Amplification of signal from the kinetochores 3.244686e-03 2.489
R-HSA-141444 Amplification of signal from unattached kinetochores via a MAD2 inhibitory si... 3.244686e-03 2.489
R-HSA-9931509 Expression of BMAL (ARNTL), CLOCK, and NPAS2 3.331854e-03 2.477
R-HSA-9820841 M-decay: degradation of maternal mRNAs by maternally stored factors 3.750957e-03 2.426
R-HSA-9679506 SARS-CoV Infections 3.917226e-03 2.407
R-HSA-68882 Mitotic Anaphase 4.227905e-03 2.374
R-HSA-418359 Reduction of cytosolic Ca++ levels 4.281882e-03 2.368
R-HSA-9820865 Z-decay: degradation of maternal mRNAs by zygotically expressed factors 4.851652e-03 2.314
R-HSA-2555396 Mitotic Metaphase and Anaphase 4.314574e-03 2.365
R-HSA-75153 Apoptotic execution phase 5.195543e-03 2.284
R-HSA-69618 Mitotic Spindle Checkpoint 5.811169e-03 2.236
R-HSA-2467813 Separation of Sister Chromatids 6.470562e-03 2.189
R-HSA-9648025 EML4 and NUDC in mitotic spindle formation 7.819375e-03 2.107
R-HSA-9609646 HCMV Infection 7.979385e-03 2.098
R-HSA-9707616 Heme signaling 1.051788e-02 1.978
R-HSA-2500257 Resolution of Sister Chromatid Cohesion 1.132701e-02 1.946
R-HSA-68877 Mitotic Prometaphase 1.195729e-02 1.922
R-HSA-72163 mRNA Splicing - Major Pathway 1.218152e-02 1.914
R-HSA-72172 mRNA Splicing 1.483936e-02 1.829
R-HSA-9909396 Circadian clock 1.537226e-02 1.813
R-HSA-166208 mTORC1-mediated signalling 1.413857e-02 1.850
R-HSA-74160 Gene expression (Transcription) 1.396745e-02 1.855
R-HSA-9615933 Postmitotic nuclear pore complex (NPC) reformation 1.816481e-02 1.741
R-HSA-9022699 MECP2 regulates neuronal receptors and channels 1.816481e-02 1.741
R-HSA-5619054 Defective SLC4A4 causes renal tubular acidosis, proximal, with ocular abnormalit... 1.900779e-02 1.721
R-HSA-418360 Platelet calcium homeostasis 2.146386e-02 1.668
R-HSA-1280215 Cytokine Signaling in Immune system 2.263306e-02 1.645
R-HSA-3247509 Chromatin modifying enzymes 2.399331e-02 1.620
R-HSA-109581 Apoptosis 2.886705e-02 1.540
R-HSA-4839726 Chromatin organization 2.969360e-02 1.527
R-HSA-450408 AUF1 (hnRNP D0) binds and destabilizes mRNA 3.135137e-02 1.504
R-HSA-3214847 HATs acetylate histones 3.403570e-02 1.468
R-HSA-191650 Regulation of gap junction activity 3.765772e-02 1.424
R-HSA-9931529 Phosphorylation and nuclear translocation of BMAL1 (ARNTL) and CLOCK 4.379600e-02 1.359
R-HSA-110381 Resolution of AP sites via the single-nucleotide replacement pathway 4.379600e-02 1.359
R-HSA-9705677 SARS-CoV-2 targets PDZ proteins in cell-cell junction 3.765772e-02 1.424
R-HSA-6811438 Intra-Golgi traffic 3.972472e-02 1.401
R-HSA-3928662 EPHB-mediated forward signaling 4.419389e-02 1.355
R-HSA-165159 MTOR signalling 4.119427e-02 1.385
R-HSA-983712 Ion channel transport 4.506619e-02 1.346
R-HSA-6811440 Retrograde transport at the Trans-Golgi-Network 4.884004e-02 1.311
R-HSA-9833576 CDH11 homotypic and heterotypic interactions 4.989550e-02 1.302
R-HSA-9017802 Noncanonical activation of NOTCH3 4.989550e-02 1.302
R-HSA-9764302 Regulation of CDH19 Expression and Function 4.989550e-02 1.302
R-HSA-9766229 Degradation of CDH1 5.203174e-02 1.284
R-HSA-174184 Cdc20:Phospho-APC/C mediated degradation of Cyclin A 5.695475e-02 1.244
R-HSA-179419 APC:Cdc20 mediated degradation of cell cycle proteins prior to satisfation of th... 5.863072e-02 1.232
R-HSA-72649 Translation initiation complex formation 6.032371e-02 1.220
R-HSA-72702 Ribosomal scanning and start codon recognition 6.375958e-02 1.195
R-HSA-72662 Activation of the mRNA upon binding of the cap-binding complex and eIFs, and sub... 6.726017e-02 1.172
R-HSA-176409 APC/C:Cdc20 mediated degradation of mitotic proteins 6.203342e-02 1.207
R-HSA-176814 Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins 6.375958e-02 1.195
R-HSA-9764561 Regulation of CDH1 Function 6.550192e-02 1.184
R-HSA-6794361 Neurexins and neuroligins 5.695475e-02 1.244
R-HSA-1462054 Alpha-defensins 6.796378e-02 1.168
R-HSA-9662361 Sensory processing of sound by outer hair cells of the cochlea 6.375958e-02 1.195
R-HSA-5578775 Ion homeostasis 6.375958e-02 1.195
R-HSA-69481 G2/M Checkpoints 6.342018e-02 1.198
R-HSA-9816359 Maternal to zygotic transition (MZT) 5.824123e-02 1.235
R-HSA-1500931 Cell-Cell communication 6.508713e-02 1.187
R-HSA-422475 Axon guidance 7.139577e-02 1.146
R-HSA-351906 Apoptotic cleavage of cell adhesion proteins 6.796378e-02 1.168
R-HSA-2173793 Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer 6.375958e-02 1.195
R-HSA-162582 Signal Transduction 6.934583e-02 1.159
R-HSA-9824446 Viral Infection Pathways 6.311072e-02 1.200
R-HSA-8953897 Cellular responses to stimuli 6.921958e-02 1.160
R-HSA-2262752 Cellular responses to stress 6.858944e-02 1.164
R-HSA-5357801 Programmed Cell Death 5.694553e-02 1.245
R-HSA-8878171 Transcriptional regulation by RUNX1 7.371983e-02 1.132
R-HSA-5649702 APEX1-Independent Resolution of AP Sites via the Single Nucleotide Replacement P... 7.391059e-02 1.131
R-HSA-450341 Activation of the AP-1 family of transcription factors 7.391059e-02 1.131
R-HSA-430116 GP1b-IX-V activation signalling 7.391059e-02 1.131
R-HSA-375165 NCAM signaling for neurite out-growth 7.444687e-02 1.128
R-HSA-176408 Regulation of APC/C activators between G1/S and early anaphase 7.444687e-02 1.128
R-HSA-936837 Ion transport by P-type ATPases 7.812879e-02 1.107
R-HSA-9931512 Phosphorylation of CLOCK, acetylation of BMAL1 (ARNTL) at target gene promoters 9.152651e-02 1.038
R-HSA-354194 GRB2:SOS provides linkage to MAPK signaling for Integrins 1.201519e-01 0.920
R-HSA-9931521 The CRY:PER:kinase complex represses transactivation by the BMAL:CLOCK (ARNTL:CL... 1.257688e-01 0.900
R-HSA-141430 Inactivation of APC/C via direct inhibition of the APC/C complex 1.257688e-01 0.900
R-HSA-372708 p130Cas linkage to MAPK signaling for integrins 1.313503e-01 0.882
R-HSA-179409 APC-Cdc20 mediated degradation of Nek2A 1.533254e-01 0.814
R-HSA-9931510 Phosphorylated BMAL1:CLOCK (ARNTL:CLOCK) activates expression of core clock gene... 1.852598e-01 0.732
R-HSA-8874081 MET activates PTK2 signaling 1.852598e-01 0.732
R-HSA-1368108 BMAL1:CLOCK,NPAS2 activates circadian expression 2.309380e-01 0.637
R-HSA-927802 Nonsense-Mediated Decay (NMD) 1.884559e-01 0.725
R-HSA-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) 1.884559e-01 0.725
R-HSA-418885 DCC mediated attractive signaling 1.144992e-01 0.941
R-HSA-9762292 Regulation of CDH11 function 7.981983e-02 1.098
R-HSA-8876493 InlA-mediated entry of Listeria monocytogenes into host cells 8.569172e-02 1.067
R-HSA-68962 Activation of the pre-replicative complex 2.058838e-01 0.686
R-HSA-141405 Inhibition of the proteolytic activity of APC/C required for the onset of anapha... 1.257688e-01 0.900
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation 1.289920e-01 0.889
R-HSA-9703465 Signaling by FLT3 fusion proteins 1.852598e-01 0.732
R-HSA-1839117 Signaling by cytosolic FGFR1 fusion mutants 1.368965e-01 0.864
R-HSA-5696397 Gap-filling DNA repair synthesis and ligation in GG-NER 1.587326e-01 0.799
R-HSA-445095 Interaction between L1 and Ankyrins 1.904650e-01 0.720
R-HSA-162588 Budding and maturation of HIV virion 2.109584e-01 0.676
R-HSA-211733 Regulation of activated PAK-2p34 by proteasome mediated degradation 2.109584e-01 0.676
R-HSA-9925563 Developmental Lineage of Pancreatic Ductal Cells 8.757563e-02 1.058
R-HSA-6807878 COPI-mediated anterograde transport 1.500375e-01 0.824
R-HSA-72737 Cap-dependent Translation Initiation 2.023307e-01 0.694
R-HSA-72613 Eukaryotic Translation Initiation 2.023307e-01 0.694
R-HSA-525793 Myogenesis 1.852598e-01 0.732
R-HSA-453276 Regulation of mitotic cell cycle 9.144602e-02 1.039
R-HSA-174143 APC/C-mediated degradation of cell cycle proteins 9.144602e-02 1.039
R-HSA-430039 mRNA decay by 5' to 3' exoribonuclease 1.257688e-01 0.900
R-HSA-350562 Regulation of ornithine decarboxylase (ODC) 2.160010e-01 0.666
R-HSA-354192 Integrin signaling 2.210117e-01 0.656
R-HSA-8854050 FBXL7 down-regulates AURKA during mitotic entry and in early mitosis 2.358541e-01 0.627
R-HSA-174113 SCF-beta-TrCP mediated degradation of Emi1 2.358541e-01 0.627
R-HSA-72706 GTP hydrolysis and joining of the 60S ribosomal subunit 1.792844e-01 0.746
R-HSA-156827 L13a-mediated translational silencing of Ceruloplasmin expression 1.792844e-01 0.746
R-HSA-8876384 Listeria monocytogenes entry into host cells 1.587326e-01 0.799
R-HSA-9759475 Regulation of CDH11 Expression and Function 2.007768e-01 0.697
R-HSA-9662360 Sensory processing of sound by inner hair cells of the cochlea 8.565959e-02 1.067
R-HSA-1839124 FGFR1 mutant receptor activation 2.210117e-01 0.656
R-HSA-9764260 Regulation of Expression and Function of Type II Classical Cadherins 2.210117e-01 0.656
R-HSA-425381 Bicarbonate transporters 8.569172e-02 1.067
R-HSA-5685939 HDR through MMEJ (alt-NHEJ) 1.030857e-01 0.987
R-HSA-1810476 RIP-mediated NFkB activation via ZBP1 1.144992e-01 0.941
R-HSA-2995410 Nuclear Envelope (NE) Reassembly 1.094491e-01 0.961
R-HSA-69002 DNA Replication Pre-Initiation 1.815707e-01 0.741
R-HSA-9659379 Sensory processing of sound 1.074044e-01 0.969
R-HSA-4420097 VEGFA-VEGFR2 Pathway 2.000094e-01 0.699
R-HSA-176187 Activation of ATR in response to replication stress 2.210117e-01 0.656
R-HSA-194138 Signaling by VEGF 2.256962e-01 0.646
R-HSA-180534 Vpu mediated degradation of CD4 2.259906e-01 0.646
R-HSA-75815 Ubiquitin-dependent degradation of Cyclin D 2.309380e-01 0.637
R-HSA-349425 Autodegradation of the E3 ubiquitin ligase COP1 2.309380e-01 0.637
R-HSA-9772755 Formation of WDR5-containing histone-modifying complexes 2.358541e-01 0.627
R-HSA-169911 Regulation of Apoptosis 2.358541e-01 0.627
R-HSA-8866652 Synthesis of active ubiquitin: roles of E1 and E2 enzymes 1.904650e-01 0.720
R-HSA-983169 Class I MHC mediated antigen processing & presentation 1.177995e-01 0.929
R-HSA-6811442 Intra-Golgi and retrograde Golgi-to-ER traffic 1.656942e-01 0.781
R-HSA-199991 Membrane Trafficking 1.373774e-01 0.862
R-HSA-2682334 EPH-Ephrin signaling 1.390703e-01 0.857
R-HSA-6794362 Protein-protein interactions at synapses 1.198240e-01 0.921
R-HSA-9010553 Regulation of expression of SLITs and ROBOs 9.608450e-02 1.017
R-HSA-1660517 Synthesis of PIPs at the late endosome membrane 1.313503e-01 0.882
R-HSA-2173788 Downregulation of TGF-beta receptor signaling 1.641056e-01 0.785
R-HSA-446210 Synthesis of UDP-N-acetyl-glucosamine 1.694446e-01 0.771
R-HSA-3295583 TRP channels 1.852598e-01 0.732
R-HSA-9013507 NOTCH3 Activation and Transmission of Signal to the Nucleus 1.641056e-01 0.785
R-HSA-69206 G1/S Transition 2.256962e-01 0.646
R-HSA-9860927 Turbulent (oscillatory, disturbed) flow shear stress activates signaling by PIEZ... 2.358541e-01 0.627
R-HSA-450282 MAPK targets/ Nuclear events mediated by MAP kinases 2.007768e-01 0.697
R-HSA-3214842 HDMs demethylate histones 1.800215e-01 0.745
R-HSA-450531 Regulation of mRNA stability by proteins that bind AU-rich elements 9.339990e-02 1.030
R-HSA-391160 Signal regulatory protein family interactions 1.088105e-01 0.963
R-HSA-446353 Cell-extracellular matrix interactions 1.144992e-01 0.941
R-HSA-210991 Basigin interactions 1.533254e-01 0.814
R-HSA-1834949 Cytosolic sensors of pathogen-associated DNA 8.950452e-02 1.048
R-HSA-9675108 Nervous system development 9.234224e-02 1.035
R-HSA-1606322 ZBP1(DAI) mediated induction of type I IFNs 1.368965e-01 0.864
R-HSA-1660514 Synthesis of PIPs at the Golgi membrane 1.852598e-01 0.732
R-HSA-917977 Transferrin endocytosis and recycling 2.358541e-01 0.627
R-HSA-9634638 Estrogen-dependent nuclear events downstream of ESR-membrane signaling 1.694446e-01 0.771
R-HSA-170834 Signaling by TGF-beta Receptor Complex 1.522517e-01 0.817
R-HSA-373753 Nephrin family interactions 1.478838e-01 0.830
R-HSA-1660516 Synthesis of PIPs at the early endosome membrane 1.800215e-01 0.745
R-HSA-936440 Negative regulators of DDX58/IFIH1 signaling 2.109584e-01 0.676
R-HSA-2173795 Downregulation of SMAD2/3:SMAD4 transcriptional activity 2.160010e-01 0.666
R-HSA-5693538 Homology Directed Repair 2.069825e-01 0.684
R-HSA-6804115 TP53 regulates transcription of additional cell cycle genes whose exact role in ... 1.641056e-01 0.785
R-HSA-597592 Post-translational protein modification 1.845111e-01 0.734
R-HSA-8983711 OAS antiviral response 9.732442e-02 1.012
R-HSA-8856825 Cargo recognition for clathrin-mediated endocytosis 1.679248e-01 0.775
R-HSA-983170 Antigen Presentation: Folding, assembly and peptide loading of class I MHC 2.309380e-01 0.637
R-HSA-2672351 Stimuli-sensing channels 1.792844e-01 0.746
R-HSA-376176 Signaling by ROBO receptors 1.703624e-01 0.769
R-HSA-212436 Generic Transcription Pathway 1.286984e-01 0.890
R-HSA-73857 RNA Polymerase II Transcription 1.312775e-01 0.882
R-HSA-168138 Toll Like Receptor 9 (TLR9) Cascade 1.976915e-01 0.704
R-HSA-2028269 Signaling by Hippo 1.313503e-01 0.882
R-HSA-9679504 Translation of Replicase and Assembly of the Replication Transcription Complex 1.368965e-01 0.864
R-HSA-418346 Platelet homeostasis 1.747257e-01 0.758
R-HSA-5663205 Infectious disease 2.032641e-01 0.692
R-HSA-9694676 Translation of Replicase and Assembly of the Replication Transcription Complex 1.641056e-01 0.785
R-HSA-3700989 Transcriptional Regulation by TP53 9.211629e-02 1.036
R-HSA-8986944 Transcriptional Regulation by MECP2 1.347354e-01 0.871
R-HSA-168256 Immune System 1.710961e-01 0.767
R-HSA-71387 Metabolism of carbohydrates and carbohydrate derivatives 8.542962e-02 1.068
R-HSA-180585 Vif-mediated degradation of APOBEC3G 2.407391e-01 0.618
R-HSA-9682385 FLT3 signaling in disease 2.407391e-01 0.618
R-HSA-8853659 RET signaling 2.407391e-01 0.618
R-HSA-5576891 Cardiac conduction 2.421738e-01 0.616
R-HSA-4641258 Degradation of DVL 2.455931e-01 0.610
R-HSA-4641257 Degradation of AXIN 2.455931e-01 0.610
R-HSA-9762114 GSK3B and BTRC:CUL1-mediated-degradation of NFE2L2 2.455931e-01 0.610
R-HSA-2173796 SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription 2.455931e-01 0.610
R-HSA-8875878 MET promotes cell motility 2.504165e-01 0.601
R-HSA-9958790 SLC-mediated transport of inorganic anions 2.504165e-01 0.601
R-HSA-9929356 GSK3B-mediated proteasomal degradation of PD-L1(CD274) 2.552092e-01 0.593
R-HSA-1236978 Cross-presentation of soluble exogenous antigens (endosomes) 2.552092e-01 0.593
R-HSA-69541 Stabilization of p53 2.552092e-01 0.593
R-HSA-5663202 Diseases of signal transduction by growth factor receptors and second messengers 2.592721e-01 0.586
R-HSA-9604323 Negative regulation of NOTCH4 signaling 2.599717e-01 0.585
R-HSA-8941858 Regulation of RUNX3 expression and activity 2.599717e-01 0.585
R-HSA-6807070 PTEN Regulation 2.634347e-01 0.579
R-HSA-73933 Resolution of Abasic Sites (AP sites) 2.647039e-01 0.577
R-HSA-5362768 Hh mutants are degraded by ERAD 2.647039e-01 0.577
R-HSA-9929491 SPOP-mediated proteasomal degradation of PD-L1(CD274) 2.647039e-01 0.577
R-HSA-3214841 PKMTs methylate histone lysines 2.647039e-01 0.577
R-HSA-5676590 NIK-->noncanonical NF-kB signaling 2.647039e-01 0.577
R-HSA-9694548 Maturation of spike protein 2.647039e-01 0.577
R-HSA-5218920 VEGFR2 mediated vascular permeability 2.647039e-01 0.577
R-HSA-9932298 Degradation of CRY and PER proteins 2.694062e-01 0.570
R-HSA-5610780 Degradation of GLI1 by the proteasome 2.694062e-01 0.570
R-HSA-5655302 Signaling by FGFR1 in disease 2.694062e-01 0.570
R-HSA-5610783 Degradation of GLI2 by the proteasome 2.694062e-01 0.570
R-HSA-5610785 GLI3 is processed to GLI3R by the proteasome 2.694062e-01 0.570
R-HSA-8856828 Clathrin-mediated endocytosis 2.752575e-01 0.560
R-HSA-1461973 Defensins 2.787217e-01 0.555
R-HSA-5387390 Hh mutants abrogate ligand secretion 2.787217e-01 0.555
R-HSA-2173789 TGF-beta receptor signaling activates SMADs 2.787217e-01 0.555
R-HSA-5653656 Vesicle-mediated transport 2.803489e-01 0.552
R-HSA-453279 Mitotic G1 phase and G1/S transition 2.823484e-01 0.549
R-HSA-373752 Netrin-1 signaling 2.833352e-01 0.548
R-HSA-187577 SCF(Skp2)-mediated degradation of p27/p21 2.833352e-01 0.548
R-HSA-9907900 Proteasome assembly 2.833352e-01 0.548
R-HSA-199977 ER to Golgi Anterograde Transport 2.847110e-01 0.546
R-HSA-76009 Platelet Aggregation (Plug Formation) 2.879195e-01 0.541
R-HSA-4608870 Asymmetric localization of PCP proteins 2.879195e-01 0.541
R-HSA-5678895 Defective CFTR causes cystic fibrosis 2.879195e-01 0.541
R-HSA-5607761 Dectin-1 mediated noncanonical NF-kB signaling 2.879195e-01 0.541
R-HSA-69613 p53-Independent G1/S DNA Damage Checkpoint 2.879195e-01 0.541
R-HSA-69601 Ubiquitin-Mediated Degradation of Phosphorylated Cdc25A 2.879195e-01 0.541
R-HSA-9824272 Somitogenesis 2.879195e-01 0.541
R-HSA-72165 mRNA Splicing - Minor Pathway 2.924747e-01 0.534
R-HSA-174084 Autodegradation of Cdh1 by Cdh1:APC/C 2.924747e-01 0.534
R-HSA-5357905 Regulation of TNFR1 signaling 2.924747e-01 0.534
R-HSA-9820448 Developmental Cell Lineages of the Exocrine Pancreas 2.965127e-01 0.528
R-HSA-174154 APC/C:Cdc20 mediated degradation of Securin 2.970011e-01 0.527
R-HSA-446728 Cell junction organization 2.976817e-01 0.526
R-HSA-5693532 DNA Double-Strand Break Repair 2.988701e-01 0.525
R-HSA-69306 DNA Replication 2.988701e-01 0.525
R-HSA-73887 Death Receptor Signaling 3.012264e-01 0.521
R-HSA-5693571 Nonhomologous End-Joining (NHEJ) 3.014988e-01 0.521
R-HSA-9031628 NGF-stimulated transcription 3.014988e-01 0.521
R-HSA-157858 Gap junction trafficking and regulation 3.059680e-01 0.514
R-HSA-69563 p53-Dependent G1 DNA Damage Response 3.059680e-01 0.514
R-HSA-69580 p53-Dependent G1/S DNA damage checkpoint 3.059680e-01 0.514
R-HSA-5658442 Regulation of RAS by GAPs 3.104089e-01 0.508
R-HSA-109704 PI3K Cascade 3.104089e-01 0.508
R-HSA-9864848 Complex IV assembly 3.148217e-01 0.502
R-HSA-1169091 Activation of NF-kappaB in B cells 3.148217e-01 0.502
R-HSA-1234176 Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha 3.148217e-01 0.502
R-HSA-5358346 Hedgehog ligand biogenesis 3.148217e-01 0.502
R-HSA-9006936 Signaling by TGFB family members 3.153352e-01 0.501
R-HSA-5673001 RAF/MAP kinase cascade 3.168828e-01 0.499
R-HSA-72187 mRNA 3'-end processing 3.192065e-01 0.496
R-HSA-68949 Orc1 removal from chromatin 3.192065e-01 0.496
R-HSA-9931269 AMPK-induced ERAD and lysosome mediated degradation of PD-L1(CD274) 3.192065e-01 0.496
R-HSA-174178 APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins ... 3.235635e-01 0.490
R-HSA-8948751 Regulation of PTEN stability and activity 3.235635e-01 0.490
R-HSA-69017 CDK-mediated phosphorylation and removal of Cdc6 3.278928e-01 0.484
R-HSA-5684996 MAPK1/MAPK3 signaling 3.291204e-01 0.483
R-HSA-9012852 Signaling by NOTCH3 3.321948e-01 0.479
R-HSA-6782210 Gap-filling DNA repair synthesis and ligation in TC-NER 3.364694e-01 0.473
R-HSA-193648 NRAGE signals death through JNK 3.364694e-01 0.473
R-HSA-75893 TNF signaling 3.364694e-01 0.473
R-HSA-112399 IRS-mediated signalling 3.407170e-01 0.468
R-HSA-6791312 TP53 Regulates Transcription of Cell Cycle Genes 3.407170e-01 0.468
R-HSA-9772572 Early SARS-CoV-2 Infection Events 3.449377e-01 0.462
R-HSA-9764274 Regulation of Expression and Function of Type I Classical Cadherins 3.479920e-01 0.458
R-HSA-9764265 Regulation of CDH1 Expression and Function 3.479920e-01 0.458
R-HSA-5693565 Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at... 3.491315e-01 0.457
R-HSA-352230 Amino acid transport across the plasma membrane 3.491315e-01 0.457
R-HSA-8943724 Regulation of PTEN gene transcription 3.532988e-01 0.452
R-HSA-351202 Metabolism of polyamines 3.532988e-01 0.452
R-HSA-73856 RNA Polymerase II Transcription Termination 3.574397e-01 0.447
R-HSA-8939902 Regulation of RUNX2 expression and activity 3.574397e-01 0.447
R-HSA-2428928 IRS-related events triggered by IGF1R 3.574397e-01 0.447
R-HSA-450294 MAP kinase activation 3.574397e-01 0.447
R-HSA-9793380 Formation of paraxial mesoderm 3.574397e-01 0.447
R-HSA-8852276 The role of GTSE1 in G2/M progression after G2 checkpoint 3.615543e-01 0.442
R-HSA-69615 G1/S DNA Damage Checkpoints 3.656428e-01 0.437
R-HSA-2428924 IGF1R signaling cascade 3.697054e-01 0.432
R-HSA-74751 Insulin receptor signalling cascade 3.697054e-01 0.432
R-HSA-6802952 Signaling by BRAF and RAF1 fusions 3.737422e-01 0.427
R-HSA-2404192 Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R) 3.737422e-01 0.427
R-HSA-1234174 Cellular response to hypoxia 3.737422e-01 0.427
R-HSA-5693606 DNA Double Strand Break Response 3.817392e-01 0.418
R-HSA-9958863 SLC-mediated transport of amino acids 3.817392e-01 0.418
R-HSA-8936459 RUNX1 regulates genes involved in megakaryocyte differentiation and platelet fun... 3.856997e-01 0.414
R-HSA-168898 Toll-like Receptor Cascades 3.892015e-01 0.410
R-HSA-1168372 Downstream signaling events of B Cell Receptor (BCR) 3.935454e-01 0.405
R-HSA-448424 Interleukin-17 signaling 3.935454e-01 0.405
R-HSA-69202 Cyclin E associated events during G1/S transition 3.935454e-01 0.405
R-HSA-195253 Degradation of beta-catenin by the destruction complex 3.935454e-01 0.405
R-HSA-5632684 Hedgehog 'on' state 3.974310e-01 0.401
R-HSA-9759476 Regulation of Homotypic Cell-Cell Adhesion 4.004540e-01 0.397
R-HSA-69656 Cyclin A:Cdk2-associated events at S phase entry 4.012920e-01 0.397
R-HSA-198725 Nuclear Events (kinase and transcription factor activation) 4.012920e-01 0.397
R-HSA-69052 Switching of origins to a post-replicative state 4.051284e-01 0.392
R-HSA-204998 Cell death signalling via NRAGE, NRIF and NADE 4.051284e-01 0.392
R-HSA-69473 G2/M DNA damage checkpoint 4.089405e-01 0.388
R-HSA-1226099 Signaling by FGFR in disease 4.089405e-01 0.388
R-HSA-9013694 Signaling by NOTCH4 4.089405e-01 0.388
R-HSA-8852135 Protein ubiquitination 4.127283e-01 0.384
R-HSA-6781827 Transcription-Coupled Nucleotide Excision Repair (TC-NER) 4.127283e-01 0.384
R-HSA-917937 Iron uptake and transport 4.127283e-01 0.384
R-HSA-948021 Transport to the Golgi and subsequent modification 4.138305e-01 0.383
R-HSA-2454202 Fc epsilon receptor (FCERI) signaling 4.160459e-01 0.381
R-HSA-5689603 UCH proteinases 4.164922e-01 0.380
R-HSA-5683057 MAPK family signaling cascades 4.175544e-01 0.379
R-HSA-9694635 Translation of Structural Proteins 4.202321e-01 0.377
R-HSA-416482 G alpha (12/13) signalling events 4.239484e-01 0.373
R-HSA-5619084 ABC transporter disorders 4.239484e-01 0.373
R-HSA-4086400 PCP/CE pathway 4.239484e-01 0.373
R-HSA-6806834 Signaling by MET 4.313102e-01 0.365
R-HSA-9833482 PKR-mediated signaling 4.313102e-01 0.365
R-HSA-5693607 Processing of DNA double-strand break ends 4.349561e-01 0.362
R-HSA-2151201 Transcriptional activation of mitochondrial biogenesis 4.349561e-01 0.362
R-HSA-397014 Muscle contraction 4.379682e-01 0.359
R-HSA-9707564 Cytoprotection by HMOX1 4.421785e-01 0.354
R-HSA-5668541 TNFR2 non-canonical NF-kB pathway 4.421785e-01 0.354
R-HSA-8939236 RUNX1 regulates transcription of genes involved in differentiation of HSCs 4.457554e-01 0.351
R-HSA-5696399 Global Genome Nucleotide Excision Repair (GG-NER) 4.457554e-01 0.351
R-HSA-6802957 Oncogenic MAPK signaling 4.493096e-01 0.347
R-HSA-5687128 MAPK6/MAPK4 signaling 4.493096e-01 0.347
R-HSA-418990 Adherens junctions interactions 4.509098e-01 0.346
R-HSA-9909615 Regulation of PD-L1(CD274) Post-translational modification 4.528412e-01 0.344
R-HSA-8951664 Neddylation 4.573184e-01 0.340
R-HSA-382551 Transport of small molecules 4.611806e-01 0.336
R-HSA-380320 Recruitment of NuMA to mitotic centrosomes 4.633019e-01 0.334
R-HSA-1236974 ER-Phagosome pathway 4.667447e-01 0.331
R-HSA-73884 Base Excision Repair 4.701655e-01 0.328
R-HSA-202424 Downstream TCR signaling 4.701655e-01 0.328
R-HSA-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) 4.769421e-01 0.322
R-HSA-74752 Signaling by Insulin receptor 4.802982e-01 0.318
R-HSA-9772573 Late SARS-CoV-2 Infection Events 4.802982e-01 0.318
R-HSA-68867 Assembly of the pre-replicative complex 4.836329e-01 0.315
R-HSA-168928 DDX58/IFIH1-mediated induction of interferon-alpha/beta 4.902389e-01 0.310
R-HSA-8939211 ESR-mediated signaling 4.907633e-01 0.309
R-HSA-392499 Metabolism of proteins 4.918335e-01 0.308
R-HSA-9954709 Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide 4.935105e-01 0.307
R-HSA-2730905 Role of LAT2/NTAL/LAB on calcium mobilization 4.967613e-01 0.304
R-HSA-5607764 CLEC7A (Dectin-1) signaling 4.967613e-01 0.304
R-HSA-157118 Signaling by NOTCH 4.968918e-01 0.304
R-HSA-168249 Innate Immune System 4.991704e-01 0.302
R-HSA-8878159 Transcriptional regulation by RUNX3 4.999914e-01 0.301
R-HSA-975871 MyD88 cascade initiated on plasma membrane 5.032009e-01 0.298
R-HSA-168142 Toll Like Receptor 10 (TLR10) Cascade 5.032009e-01 0.298
R-HSA-168176 Toll Like Receptor 5 (TLR5) Cascade 5.032009e-01 0.298
R-HSA-193704 p75 NTR receptor-mediated signalling 5.063901e-01 0.296
R-HSA-5610787 Hedgehog 'off' state 5.095590e-01 0.293
R-HSA-382556 ABC-family proteins mediated transport 5.095590e-01 0.293
R-HSA-9009391 Extra-nuclear estrogen signaling 5.127077e-01 0.290
R-HSA-9020702 Interleukin-1 signaling 5.127077e-01 0.290
R-HSA-1483255 PI Metabolism 5.158364e-01 0.287
R-HSA-421270 Cell-cell junction organization 5.189631e-01 0.285
R-HSA-9633012 Response of EIF2AK4 (GCN2) to amino acid deficiency 5.220343e-01 0.282
R-HSA-9860931 Response of endothelial cells to shear stress 5.220343e-01 0.282
R-HSA-5696398 Nucleotide Excision Repair 5.281536e-01 0.277
R-HSA-168164 Toll Like Receptor 3 (TLR3) Cascade 5.281536e-01 0.277
R-HSA-69239 Synthesis of DNA 5.341953e-01 0.272
R-HSA-9725370 Signaling by ALK fusions and activated point mutants 5.341953e-01 0.272
R-HSA-9700206 Signaling by ALK in cancer 5.341953e-01 0.272
R-HSA-1236975 Antigen processing-Cross presentation 5.371874e-01 0.270
R-HSA-975138 TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation 5.371874e-01 0.270
R-HSA-975155 MyD88 dependent cascade initiated on endosome 5.401604e-01 0.267
R-HSA-446203 Asparagine N-linked glycosylation 5.412567e-01 0.267
R-HSA-9734767 Developmental Cell Lineages 5.423068e-01 0.266
R-HSA-937061 TRIF (TICAM1)-mediated TLR4 signaling 5.431145e-01 0.265
R-HSA-166166 MyD88-independent TLR4 cascade 5.431145e-01 0.265
R-HSA-202403 TCR signaling 5.431145e-01 0.265
R-HSA-6803157 Antimicrobial peptides 5.460499e-01 0.263
R-HSA-9711123 Cellular response to chemical stress 5.518027e-01 0.258
R-HSA-168181 Toll Like Receptor 7/8 (TLR7/8) Cascade 5.518646e-01 0.258
R-HSA-72766 Translation 5.519112e-01 0.258
R-HSA-9855142 Cellular responses to mechanical stimuli 5.547442e-01 0.256
R-HSA-5693567 HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA) 5.547442e-01 0.256
R-HSA-5628897 TP53 Regulates Metabolic Genes 5.604487e-01 0.251
R-HSA-76002 Platelet activation, signaling and aggregation 5.630163e-01 0.249
R-HSA-373760 L1CAM interactions 5.660807e-01 0.247
R-HSA-1643685 Disease 5.665579e-01 0.247
R-HSA-1592230 Mitochondrial biogenesis 5.688699e-01 0.245
R-HSA-8878166 Transcriptional regulation by RUNX2 5.743950e-01 0.241
R-HSA-166058 MyD88:MAL(TIRAP) cascade initiated on plasma membrane 5.743950e-01 0.241
R-HSA-168188 Toll Like Receptor TLR6:TLR2 Cascade 5.743950e-01 0.241
R-HSA-9759194 Nuclear events mediated by NFE2L2 5.798501e-01 0.237
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases 5.813421e-01 0.236
R-HSA-168179 Toll Like Receptor TLR1:TLR2 Cascade 5.825516e-01 0.235
R-HSA-181438 Toll Like Receptor 2 (TLR2) Cascade 5.825516e-01 0.235
R-HSA-109582 Hemostasis 5.902812e-01 0.229
R-HSA-114608 Platelet degranulation 5.984031e-01 0.223
R-HSA-1257604 PIP3 activates AKT signaling 6.006896e-01 0.221
R-HSA-187037 Signaling by NTRK1 (TRKA) 6.009864e-01 0.221
R-HSA-446219 Synthesis of substrates in N-glycan biosythesis 6.111562e-01 0.214
R-HSA-1266738 Developmental Biology 6.150211e-01 0.211
R-HSA-76005 Response to elevated platelet cytosolic Ca2+ 6.161444e-01 0.210
R-HSA-9018519 Estrogen-dependent gene expression 6.259315e-01 0.203
R-HSA-3858494 Beta-catenin independent WNT signaling 6.259315e-01 0.203
R-HSA-9948299 Ribosome-associated quality control 6.307320e-01 0.200
R-HSA-5358351 Signaling by Hedgehog 6.307320e-01 0.200
R-HSA-9664407 Parasite infection 6.354714e-01 0.197
R-HSA-9664417 Leishmania phagocytosis 6.354714e-01 0.197
R-HSA-9664422 FCGR3A-mediated phagocytosis 6.354714e-01 0.197
R-HSA-1632852 Macroautophagy 6.378185e-01 0.195
R-HSA-2029482 Regulation of actin dynamics for phagocytic cup formation 6.378185e-01 0.195
R-HSA-2871837 FCERI mediated NF-kB activation 6.470581e-01 0.189
R-HSA-69242 S Phase 6.560643e-01 0.183
R-HSA-166016 Toll Like Receptor 4 (TLR4) Cascade 6.560643e-01 0.183
R-HSA-166520 Signaling by NTRKs 6.560643e-01 0.183
R-HSA-9758941 Gastrulation 6.582800e-01 0.182
R-HSA-9755511 KEAP1-NFE2L2 pathway 6.626692e-01 0.179
R-HSA-446652 Interleukin-1 family signaling 6.648428e-01 0.177
R-HSA-9917777 Epigenetic regulation by WDR5-containing histone modifying complexes 6.691484e-01 0.174
R-HSA-1989781 PPARA activates gene expression 6.712807e-01 0.173
R-HSA-9612973 Autophagy 6.733993e-01 0.172
R-HSA-400206 Regulation of lipid metabolism by PPARalpha 6.755044e-01 0.170
R-HSA-446193 Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, L... 6.755044e-01 0.170
R-HSA-9006925 Intracellular signaling by second messengers 6.761127e-01 0.170
R-HSA-9711097 Cellular response to starvation 6.775961e-01 0.169
R-HSA-983705 Signaling by the B Cell Receptor (BCR) 6.775961e-01 0.169
R-HSA-877300 Interferon gamma signaling 6.796744e-01 0.168
R-HSA-73894 DNA Repair 7.018106e-01 0.154
R-HSA-5621481 C-type lectin receptors (CLRs) 7.055153e-01 0.151
R-HSA-9006931 Signaling by Nuclear Receptors 7.059273e-01 0.151
R-HSA-9909648 Regulation of PD-L1(CD274) expression 7.074153e-01 0.150
R-HSA-5689880 Ub-specific processing proteases 7.093031e-01 0.149
R-HSA-2029480 Fcgamma receptor (FCGR) dependent phagocytosis 7.111790e-01 0.148
R-HSA-9678108 SARS-CoV-1 Infection 7.130428e-01 0.147
R-HSA-611105 Respiratory electron transport 7.185631e-01 0.144
R-HSA-201681 TCF dependent signaling in response to WNT 7.275308e-01 0.138
R-HSA-69275 G2/M Transition 7.327750e-01 0.135
R-HSA-453274 Mitotic G2-G2/M phases 7.362155e-01 0.133
R-HSA-425407 SLC-mediated transmembrane transport 7.505703e-01 0.125
R-HSA-389948 Co-inhibition by PD-1 7.559562e-01 0.122
R-HSA-202733 Cell surface interactions at the vascular wall 8.093115e-01 0.092
R-HSA-1280218 Adaptive Immune System 8.198601e-01 0.086
R-HSA-112316 Neuronal System 8.236136e-01 0.084
R-HSA-5688426 Deubiquitination 8.303778e-01 0.081
R-HSA-388841 Regulation of T cell activation by CD28 family 8.314781e-01 0.080
R-HSA-9658195 Leishmania infection 8.568003e-01 0.067
R-HSA-9824443 Parasitic Infection Pathways 8.568003e-01 0.067
R-HSA-1483257 Phospholipid metabolism 8.692946e-01 0.061
R-HSA-195721 Signaling by WNT 8.718281e-01 0.060
R-HSA-1852241 Organelle biogenesis and maintenance 8.889792e-01 0.051
R-HSA-212165 Epigenetic regulation of gene expression 8.911345e-01 0.050
R-HSA-1428517 Aerobic respiration and respiratory electron transport 9.032233e-01 0.044
R-HSA-449147 Signaling by Interleukins 9.218086e-01 0.035
R-HSA-9824439 Bacterial Infection Pathways 9.302627e-01 0.031
R-HSA-6798695 Neutrophil degranulation 9.551190e-01 0.020
R-HSA-71291 Metabolism of amino acids and derivatives 9.845563e-01 0.007
R-HSA-388396 GPCR downstream signalling 9.945650e-01 0.002
R-HSA-372790 Signaling by GPCR 9.968954e-01 0.001
R-HSA-9709957 Sensory Perception 9.977643e-01 0.001
R-HSA-556833 Metabolism of lipids 9.995377e-01 0.000
R-HSA-1430728 Metabolism 9.998996e-01 0.000
Download
kinase JSD_mean pearson_surrounding kinase_max_IC_position max_position_JSD
GRK1GRK1 0.810 0.306 -2 0.739
COTCOT 0.808 0.257 2 0.767
CLK3CLK3 0.804 0.208 1 0.756
BMPR1BBMPR1B 0.802 0.328 1 0.838
MOSMOS 0.799 0.276 1 0.811
CDC7CDC7 0.796 0.167 1 0.819
GRK7GRK7 0.793 0.262 1 0.723
KISKIS 0.792 0.114 1 0.578
FAM20CFAM20C 0.791 0.182 2 0.651
IKKBIKKB 0.788 0.079 -2 0.637
IKKAIKKA 0.788 0.149 -2 0.639
PIM3PIM3 0.787 0.094 -3 0.709
BMPR1ABMPR1A 0.784 0.263 1 0.813
GRK6GRK6 0.784 0.195 1 0.788
DSTYKDSTYK 0.783 0.092 2 0.800
MTORMTOR 0.781 0.025 1 0.660
GRK5GRK5 0.779 0.081 -3 0.790
CAMK2GCAMK2G 0.779 0.038 2 0.740
CK2A2CK2A2 0.779 0.232 1 0.756
PRPKPRPK 0.779 -0.026 -1 0.760
ATRATR 0.778 0.064 1 0.740
TGFBR1TGFBR1 0.776 0.161 -2 0.704
ACVR2BACVR2B 0.776 0.198 -2 0.685
RAF1RAF1 0.775 -0.008 1 0.735
NDR2NDR2 0.775 0.017 -3 0.699
GRK4GRK4 0.775 0.096 -2 0.736
ERK5ERK5 0.775 0.089 1 0.765
CK1ECK1E 0.774 0.171 -3 0.645
CK2A1CK2A1 0.773 0.228 1 0.741
ACVR2AACVR2A 0.772 0.167 -2 0.672
CHAK2CHAK2 0.772 0.063 -1 0.718
SKMLCKSKMLCK 0.772 0.042 -2 0.724
CDK1CDK1 0.771 0.083 1 0.552
ALK2ALK2 0.771 0.165 -2 0.711
BMPR2BMPR2 0.770 -0.048 -2 0.754
CDKL1CDKL1 0.770 0.057 -3 0.685
GRK2GRK2 0.769 0.132 -2 0.633
CK1DCK1D 0.769 0.169 -3 0.602
MLK1MLK1 0.769 0.017 2 0.688
CAMK2BCAMK2B 0.768 0.079 2 0.748
PIM1PIM1 0.768 0.040 -3 0.660
CLK2CLK2 0.767 0.097 -3 0.632
GRK3GRK3 0.767 0.149 -2 0.605
ALK4ALK4 0.767 0.095 -2 0.729
GCN2GCN2 0.766 -0.144 2 0.671
TBK1TBK1 0.766 -0.070 1 0.593
PDHK4PDHK4 0.766 -0.210 1 0.730
PASKPASK 0.766 0.208 -3 0.733
CDK8CDK8 0.766 0.055 1 0.552
CDKL5CDKL5 0.766 0.092 -3 0.672
HIPK4HIPK4 0.766 0.059 1 0.668
CAMK1BCAMK1B 0.764 -0.082 -3 0.738
P38BP38B 0.764 0.117 1 0.557
SRPK1SRPK1 0.764 0.012 -3 0.644
CAMK2ACAMK2A 0.763 0.058 2 0.766
IKKEIKKE 0.763 -0.090 1 0.585
JNK3JNK3 0.763 0.062 1 0.541
DLKDLK 0.763 0.010 1 0.740
GSK3AGSK3A 0.763 0.159 4 0.579
RSK2RSK2 0.763 -0.012 -3 0.644
ATMATM 0.763 0.029 1 0.687
ICKICK 0.762 0.089 -3 0.714
JNK2JNK2 0.762 0.070 1 0.509
NLKNLK 0.761 -0.082 1 0.703
CDK19CDK19 0.761 0.057 1 0.520
P38DP38D 0.760 0.096 1 0.468
MAPKAPK2MAPKAPK2 0.760 0.010 -3 0.585
MLK3MLK3 0.759 0.030 2 0.619
CK1A2CK1A2 0.759 0.142 -3 0.603
LATS1LATS1 0.759 0.060 -3 0.706
PRKD1PRKD1 0.759 -0.027 -3 0.674
DYRK2DYRK2 0.758 0.033 1 0.596
NEK6NEK6 0.757 -0.090 -2 0.713
MLK4MLK4 0.757 0.055 2 0.591
TLK2TLK2 0.756 0.038 1 0.681
ERK1ERK1 0.756 0.071 1 0.533
CAMK2DCAMK2D 0.755 -0.068 -3 0.686
RIPK3RIPK3 0.755 -0.110 3 0.652
TGFBR2TGFBR2 0.755 -0.094 -2 0.676
P38AP38A 0.754 0.083 1 0.616
NIKNIK 0.754 -0.175 -3 0.745
CK1G1CK1G1 0.754 0.087 -3 0.637
DAPK2DAPK2 0.754 -0.088 -3 0.733
NEK7NEK7 0.753 -0.166 -3 0.701
CAMLCKCAMLCK 0.753 -0.102 -2 0.699
LATS2LATS2 0.753 -0.049 -5 0.668
PKN3PKN3 0.753 -0.094 -3 0.685
ULK2ULK2 0.753 -0.243 2 0.625
PDHK1PDHK1 0.752 -0.297 1 0.705
MST4MST4 0.752 -0.102 2 0.753
GSK3BGSK3B 0.752 0.106 4 0.570
NDR1NDR1 0.752 -0.116 -3 0.684
P38GP38G 0.752 0.040 1 0.461
RSK4RSK4 0.752 0.004 -3 0.612
HIPK2HIPK2 0.751 0.050 1 0.507
PLK1PLK1 0.751 -0.009 -2 0.652
CDK18CDK18 0.751 0.030 1 0.516
DNAPKDNAPK 0.751 0.022 1 0.577
JNK1JNK1 0.750 0.058 1 0.510
PLK2PLK2 0.750 0.126 -3 0.762
MLK2MLK2 0.750 -0.095 2 0.687
P90RSKP90RSK 0.750 -0.064 -3 0.644
CK1ACK1A 0.750 0.167 -3 0.536
MASTLMASTL 0.750 -0.237 -2 0.701
MEK1MEK1 0.750 -0.064 2 0.723
HUNKHUNK 0.749 -0.159 2 0.680
CDK3CDK3 0.749 0.043 1 0.492
PLK3PLK3 0.749 -0.002 2 0.688
CDK5CDK5 0.748 0.016 1 0.596
PRKXPRKX 0.748 0.003 -3 0.547
DYRK4DYRK4 0.748 0.043 1 0.527
WNK1WNK1 0.748 -0.168 -2 0.760
PRKD2PRKD2 0.748 -0.062 -3 0.624
YSK4YSK4 0.748 -0.085 1 0.658
NUAK2NUAK2 0.747 -0.113 -3 0.709
GAKGAK 0.747 0.169 1 0.797
SRPK2SRPK2 0.747 -0.024 -3 0.563
MARK4MARK4 0.747 -0.140 4 0.723
SRPK3SRPK3 0.746 -0.025 -3 0.621
TTBK2TTBK2 0.746 -0.148 2 0.548
MEKK3MEKK3 0.745 -0.010 1 0.702
PKRPKR 0.745 -0.093 1 0.745
SMG1SMG1 0.745 -0.069 1 0.689
ANKRD3ANKRD3 0.744 -0.206 1 0.739
MPSK1MPSK1 0.744 0.121 1 0.712
PKN2PKN2 0.744 -0.136 -3 0.691
BCKDKBCKDK 0.744 -0.226 -1 0.668
ULK1ULK1 0.744 -0.228 -3 0.690
DRAK1DRAK1 0.744 0.026 1 0.754
AURCAURC 0.743 -0.060 -2 0.487
MSK1MSK1 0.743 -0.034 -3 0.610
P70S6KBP70S6KB 0.743 -0.108 -3 0.654
CDK7CDK7 0.743 -0.035 1 0.570
PKCDPKCD 0.743 -0.102 2 0.649
CLK4CLK4 0.742 -0.042 -3 0.645
PKACBPKACB 0.742 -0.037 -2 0.494
CDK17CDK17 0.742 0.001 1 0.470
PKACGPKACG 0.742 -0.115 -2 0.565
MAPKAPK3MAPKAPK3 0.742 -0.113 -3 0.615
RSK3RSK3 0.742 -0.105 -3 0.636
CDK13CDK13 0.742 -0.043 1 0.537
TSSK2TSSK2 0.741 -0.119 -5 0.705
PAK1PAK1 0.741 -0.101 -2 0.660
PRP4PRP4 0.741 -0.005 -3 0.654
CDK2CDK2 0.740 -0.030 1 0.632
VRK2VRK2 0.740 -0.235 1 0.755
HIPK1HIPK1 0.740 -0.008 1 0.609
AURAAURA 0.739 -0.042 -2 0.462
AMPKA1AMPKA1 0.739 -0.175 -3 0.707
BRAFBRAF 0.739 -0.062 -4 0.682
ERK2ERK2 0.738 -0.016 1 0.562
MSK2MSK2 0.738 -0.093 -3 0.617
IRE1IRE1 0.738 -0.157 1 0.703
NEK9NEK9 0.737 -0.270 2 0.684
RIPK1RIPK1 0.737 -0.263 1 0.700
MAKMAK 0.736 0.157 -2 0.788
TAO3TAO3 0.735 -0.024 1 0.685
MEKK2MEKK2 0.735 -0.063 2 0.655
PKCBPKCB 0.735 -0.103 2 0.606
WNK3WNK3 0.734 -0.344 1 0.686
MYLK4MYLK4 0.734 -0.091 -2 0.612
MST3MST3 0.734 -0.053 2 0.731
TLK1TLK1 0.734 -0.089 -2 0.716
CDK16CDK16 0.732 0.003 1 0.483
CLK1CLK1 0.732 -0.060 -3 0.618
TSSK1TSSK1 0.732 -0.141 -3 0.728
IRE2IRE2 0.732 -0.135 2 0.589
DYRK1ADYRK1A 0.732 -0.000 1 0.608
AMPKA2AMPKA2 0.731 -0.166 -3 0.668
CDK12CDK12 0.730 -0.055 1 0.506
PIM2PIM2 0.730 -0.058 -3 0.613
PKCGPKCG 0.730 -0.134 2 0.607
MST2MST2 0.729 -0.022 1 0.707
CHAK1CHAK1 0.729 -0.186 2 0.628
GCKGCK 0.729 -0.006 1 0.702
AKT2AKT2 0.728 -0.070 -3 0.570
MEK5MEK5 0.728 -0.247 2 0.689
PINK1PINK1 0.728 -0.132 1 0.715
ZAKZAK 0.728 -0.165 1 0.659
PKCAPKCA 0.728 -0.122 2 0.591
NIM1NIM1 0.728 -0.221 3 0.687
TAK1TAK1 0.727 -0.008 1 0.703
PAK3PAK3 0.727 -0.186 -2 0.647
CAMK4CAMK4 0.727 -0.228 -3 0.673
PAK2PAK2 0.727 -0.158 -2 0.642
PERKPERK 0.727 -0.203 -2 0.714
QSKQSK 0.727 -0.144 4 0.686
EEF2KEEF2K 0.726 -0.022 3 0.779
CDK14CDK14 0.725 -0.041 1 0.548
PKCZPKCZ 0.725 -0.160 2 0.631
CHK1CHK1 0.725 -0.131 -3 0.661
ERK7ERK7 0.724 -0.009 2 0.465
MEKK1MEKK1 0.724 -0.211 1 0.679
MARK3MARK3 0.724 -0.131 4 0.639
AURBAURB 0.724 -0.114 -2 0.482
PRKD3PRKD3 0.724 -0.132 -3 0.612
CDK9CDK9 0.723 -0.103 1 0.544
CAMKK1CAMKK1 0.723 -0.155 -2 0.613
PAK6PAK6 0.722 -0.112 -2 0.562
DYRK1BDYRK1B 0.722 -0.051 1 0.555
HIPK3HIPK3 0.722 -0.059 1 0.578
MARK2MARK2 0.722 -0.146 4 0.607
MAP2K6_TYRMAP2K6_TYR 0.721 0.270 -1 0.795
BRSK1BRSK1 0.721 -0.159 -3 0.640
NEK5NEK5 0.721 -0.205 1 0.723
PDHK1_TYRPDHK1_TYR 0.721 0.289 -1 0.809
PKCHPKCH 0.721 -0.172 2 0.574
DYRK3DYRK3 0.721 -0.054 1 0.606
DAPK1DAPK1 0.720 -0.036 -3 0.657
CDK10CDK10 0.720 -0.049 1 0.537
PDHK4_TYRPDHK4_TYR 0.719 0.208 2 0.802
PDHK3_TYRPDHK3_TYR 0.719 0.193 4 0.841
DAPK3DAPK3 0.719 -0.067 -3 0.665
PLK4PLK4 0.719 -0.204 2 0.481
SIKSIK 0.719 -0.160 -3 0.616
PKACAPKACA 0.719 -0.074 -2 0.440
DCAMKL1DCAMKL1 0.719 -0.144 -3 0.639
ALPHAK3ALPHAK3 0.719 0.094 -1 0.694
PKG2PKG2 0.719 -0.134 -2 0.495
SGK3SGK3 0.719 -0.129 -3 0.613
LKB1LKB1 0.718 -0.137 -3 0.669
CAMKK2CAMKK2 0.718 -0.162 -2 0.599
MNK1MNK1 0.718 -0.176 -2 0.611
MNK2MNK2 0.718 -0.197 -2 0.607
NEK2NEK2 0.718 -0.286 2 0.668
QIKQIK 0.718 -0.274 -3 0.684
NUAK1NUAK1 0.717 -0.188 -3 0.639
BMPR2_TYRBMPR2_TYR 0.717 0.181 -1 0.797
NEK11NEK11 0.717 -0.212 1 0.663
MINKMINK 0.716 -0.111 1 0.672
TNIKTNIK 0.715 -0.078 3 0.804
SMMLCKSMMLCK 0.715 -0.151 -3 0.682
HPK1HPK1 0.715 -0.086 1 0.676
MOKMOK 0.715 0.047 1 0.656
MELKMELK 0.715 -0.229 -3 0.641
NEK8NEK8 0.715 -0.204 2 0.674
CAMK1GCAMK1G 0.715 -0.161 -3 0.622
CK1G2CK1G2 0.715 0.139 -3 0.570
TXKTXK 0.714 0.245 1 0.839
HRIHRI 0.714 -0.314 -2 0.720
MAP2K4_TYRMAP2K4_TYR 0.714 0.135 -1 0.777
MAPKAPK5MAPKAPK5 0.714 -0.194 -3 0.558
MARK1MARK1 0.714 -0.183 4 0.658
PHKG1PHKG1 0.713 -0.235 -3 0.674
YANK3YANK3 0.713 -0.023 2 0.337
CK1G3CK1G3 0.713 0.106 -3 0.498
WNK4WNK4 0.712 -0.263 -2 0.766
PDK1PDK1 0.712 -0.171 1 0.654
MST1MST1 0.712 -0.123 1 0.682
TAO2TAO2 0.711 -0.202 2 0.711
OSR1OSR1 0.711 -0.009 2 0.662
TTBK1TTBK1 0.710 -0.218 2 0.476
HGKHGK 0.710 -0.144 3 0.792
BRSK2BRSK2 0.710 -0.245 -3 0.655
MAP3K15MAP3K15 0.709 -0.172 1 0.634
KHS2KHS2 0.709 -0.061 1 0.671
CDK6CDK6 0.709 -0.050 1 0.519
FYNFYN 0.707 0.208 -1 0.746
BUB1BUB1 0.707 -0.030 -5 0.695
VRK1VRK1 0.707 -0.190 2 0.689
SYKSYK 0.707 0.229 -1 0.753
MEKK6MEKK6 0.707 -0.202 1 0.687
SNRKSNRK 0.706 -0.318 2 0.538
KHS1KHS1 0.706 -0.101 1 0.651
AKT1AKT1 0.706 -0.114 -3 0.570
CAMK1DCAMK1D 0.706 -0.124 -3 0.543
P70S6KP70S6K 0.706 -0.150 -3 0.561
PBKPBK 0.705 -0.031 1 0.736
LRRK2LRRK2 0.705 -0.249 2 0.710
PTK2PTK2 0.705 0.198 -1 0.745
DCAMKL2DCAMKL2 0.705 -0.191 -3 0.663
SSTKSSTK 0.705 -0.193 4 0.674
SLKSLK 0.704 -0.136 -2 0.570
IRAK4IRAK4 0.704 -0.298 1 0.693
TTKTTK 0.704 -0.044 -2 0.686
EPHA4EPHA4 0.703 0.090 2 0.713
PKCEPKCE 0.703 -0.130 2 0.590
BLKBLK 0.702 0.165 -1 0.758
FGRFGR 0.702 0.102 1 0.816
EPHA6EPHA6 0.702 0.068 -1 0.771
EPHB4EPHB4 0.701 0.080 -1 0.725
TESK1_TYRTESK1_TYR 0.701 -0.124 3 0.810
CDK4CDK4 0.701 -0.067 1 0.497
SGK1SGK1 0.700 -0.080 -3 0.490
NEK4NEK4 0.699 -0.294 1 0.669
SRMSSRMS 0.699 0.094 1 0.816
FERFER 0.699 0.055 1 0.824
PKCTPKCT 0.699 -0.212 2 0.577
MAP2K7_TYRMAP2K7_TYR 0.699 -0.190 2 0.746
PAK5PAK5 0.699 -0.157 -2 0.502
LCKLCK 0.698 0.128 -1 0.757
AKT3AKT3 0.698 -0.088 -3 0.510
YES1YES1 0.698 0.065 -1 0.729
SBKSBK 0.697 -0.069 -3 0.458
ABL2ABL2 0.697 0.085 -1 0.693
PKCIPKCI 0.697 -0.203 2 0.601
PKMYT1_TYRPKMYT1_TYR 0.697 -0.135 3 0.776
NEK1NEK1 0.697 -0.277 1 0.686
PINK1_TYRPINK1_TYR 0.696 -0.120 1 0.738
STK33STK33 0.696 -0.215 2 0.486
ROCK2ROCK2 0.696 -0.121 -3 0.636
PAK4PAK4 0.696 -0.146 -2 0.502
IRAK1IRAK1 0.694 -0.383 -1 0.612
MEK2MEK2 0.694 -0.300 2 0.665
ITKITK 0.694 0.075 -1 0.691
EPHB2EPHB2 0.693 0.072 -1 0.710
LOKLOK 0.693 -0.233 -2 0.600
BIKEBIKE 0.693 0.000 1 0.702
HCKHCK 0.692 0.032 -1 0.742
EPHB1EPHB1 0.692 0.039 1 0.800
CHK2CHK2 0.692 -0.124 -3 0.511
MRCKAMRCKA 0.692 -0.145 -3 0.602
YSK1YSK1 0.691 -0.219 2 0.666
ABL1ABL1 0.691 0.039 -1 0.679
BMXBMX 0.691 0.056 -1 0.613
INSRRINSRR 0.690 0.006 3 0.635
EPHB3EPHB3 0.690 0.033 -1 0.716
DMPK1DMPK1 0.690 -0.099 -3 0.629
HASPINHASPIN 0.690 -0.095 -1 0.532
MRCKBMRCKB 0.689 -0.145 -3 0.594
YANK2YANK2 0.688 -0.021 2 0.349
SRCSRC 0.688 0.085 -1 0.720
PHKG2PHKG2 0.688 -0.264 -3 0.654
CSF1RCSF1R 0.687 -0.041 3 0.689
ASK1ASK1 0.687 -0.204 1 0.618
MYO3AMYO3A 0.686 -0.141 1 0.655
FLT1FLT1 0.686 0.018 -1 0.767
KITKIT 0.686 -0.030 3 0.697
LIMK2_TYRLIMK2_TYR 0.685 -0.173 -3 0.736
MYO3BMYO3B 0.685 -0.151 2 0.692
EPHA5EPHA5 0.685 0.059 2 0.693
LYNLYN 0.685 0.041 3 0.624
METMET 0.685 0.011 3 0.678
EPHA8EPHA8 0.684 0.068 -1 0.726
RETRET 0.683 -0.187 1 0.674
PKN1PKN1 0.683 -0.183 -3 0.579
CAMK1ACAMK1A 0.683 -0.152 -3 0.526
EPHA7EPHA7 0.682 0.005 2 0.687
TYRO3TYRO3 0.681 -0.158 3 0.689
RIPK2RIPK2 0.681 -0.369 1 0.609
JAK3JAK3 0.681 -0.098 1 0.661
CRIKCRIK 0.680 -0.114 -3 0.575
JAK2JAK2 0.680 -0.172 1 0.654
EPHA3EPHA3 0.680 -0.052 2 0.666
EGFREGFR 0.680 0.010 1 0.586
TECTEC 0.680 -0.026 -1 0.597
CSKCSK 0.679 0.020 2 0.683
ROS1ROS1 0.679 -0.158 3 0.656
FRKFRK 0.679 0.012 -1 0.753
ERBB4ERBB4 0.679 0.069 1 0.640
MERTKMERTK 0.679 -0.035 3 0.674
ZAP70ZAP70 0.679 0.104 -1 0.656
TYK2TYK2 0.678 -0.262 1 0.666
DDR1DDR1 0.678 -0.222 4 0.740
MST1RMST1R 0.678 -0.231 3 0.708
ERBB2ERBB2 0.678 -0.067 1 0.666
AAK1AAK1 0.677 0.039 1 0.620
TNK2TNK2 0.677 -0.099 3 0.654
FGFR4FGFR4 0.676 0.008 -1 0.673
FGFR2FGFR2 0.675 -0.148 3 0.699
STLK3STLK3 0.675 -0.202 1 0.626
LIMK1_TYRLIMK1_TYR 0.675 -0.341 2 0.712
PTK2BPTK2B 0.675 -0.007 -1 0.634
MATKMATK 0.674 -0.038 -1 0.623
ROCK1ROCK1 0.673 -0.161 -3 0.599
EPHA2EPHA2 0.673 0.034 -1 0.692
KDRKDR 0.673 -0.126 3 0.651
BTKBTK 0.672 -0.128 -1 0.636
FLT3FLT3 0.672 -0.143 3 0.690
FGFR3FGFR3 0.672 -0.088 3 0.667
NTRK1NTRK1 0.672 -0.128 -1 0.699
NTRK3NTRK3 0.672 -0.061 -1 0.670
PTK6PTK6 0.671 -0.146 -1 0.612
PDGFRBPDGFRB 0.668 -0.227 3 0.693
TAO1TAO1 0.667 -0.249 1 0.585
AXLAXL 0.666 -0.180 3 0.662
NEK3NEK3 0.666 -0.368 1 0.616
INSRINSR 0.665 -0.128 3 0.619
TEKTEK 0.664 -0.218 3 0.628
LTKLTK 0.664 -0.160 3 0.634
WEE1_TYRWEE1_TYR 0.664 -0.155 -1 0.620
PKG1PKG1 0.663 -0.193 -2 0.411
JAK1JAK1 0.663 -0.177 1 0.596
FGFR1FGFR1 0.663 -0.223 3 0.650
TNNI3K_TYRTNNI3K_TYR 0.663 -0.160 1 0.701
FLT4FLT4 0.663 -0.168 3 0.662
ALKALK 0.661 -0.186 3 0.596
IGF1RIGF1R 0.661 -0.055 3 0.560
NEK10_TYRNEK10_TYR 0.660 -0.234 1 0.525
NTRK2NTRK2 0.657 -0.220 3 0.632
DDR2DDR2 0.657 -0.122 3 0.624
EPHA1EPHA1 0.657 -0.173 3 0.657
PDGFRAPDGFRA 0.655 -0.323 3 0.694
TNK1TNK1 0.653 -0.276 3 0.682
FESFES 0.649 -0.074 -1 0.585
MUSKMUSK 0.638 -0.196 1 0.586